New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4744224 =	62 (1.550)	3 (0.080)	3/320	NT	5.2%	coding (602/813 nt)	PP_4198	OmpA family protein
	?	AE015451	4744275 =	50 (1.310)					coding (551/813 nt)	PP_4198	OmpA family protein

TGAGGCCAAACTGGCCAGCGTGCAGCAGCAGGGCAAGTGGGTCGAGTCGCAGATTGCCGCGTTGGCTTCGGAGCAGGCCGACCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4744466‑4744224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgggTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCA  >  AE015451/4744275‑4744329                                                                                                                                                                                                                                                                                                            TGAGGCCAAACTGGCCAGCGTGCAGCAGCAGGGCAAGTGGGTCGAGTCGCAGATTGCCGCGTTGGCTTCGGAGCAGGCCGACCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTG                                                                >  1:467581/1‑236   AGGCCAAACTGGCCAGCGTGCAGCAGCAGGGCAAGTGGGTCGAGTCGCAGATTGCCGCGTTGGCTTCGGAGCAGGCCGACCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGGa                                                              >  2:393515/1‑235            TGGCCAGCGTGCAGGAGCAGGGCAAGTGGGTCGAGTCGCAGATTGCCGCGTGGGCTTCGGAGCAGGCCGACCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGGCGCGGGTTG                                                      <  1:178363/235‑1                                                                                  CCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCA  <  1:648344/217‑1                                                                                                                GCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTG                                                                >  1:630503/1‑125                                                                                                                GCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTG                                                                <  2:630502/125‑1                                                                                                                                                                                 AGTTCCCGCAGCTCAGCCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGCCGC                                                            >  2:706032/1‑64                                                                                                                                                                                     CCTGCAGCTCAACCCGCGCCGGGTAGTGCGGATTGAGGGCTATACCGACAGTACTGGCGCGGGTTGCGCTGCAGGAACT                                         <  2:64808/79‑1                                                                                                                                                                                         CAGCTCGACCCGCGCCGGGTAGTGCGTATTGAGGGCTATGCCGACAGTACGGGCGCGGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAG                       <  1:689529/93‑1                                                                                                                                                                                                                                                 GGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTT       <  1:10943/53‑1                                                                                                                                                                                                                                                 GGGTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTT       >  2:10943/1‑53                                                                                                                                                                                                                                                                                                            TGAGGCCAAACTGGCCAGCGTGCAGCAGCAGGGCAAGTGGGTCGAGTCGCAGATTGCCGCGTTGGCTTCGGAGCAGGCCGACCGTGGCTTGGTGATGACCTTGGGCGATGTGCTGTTCGATACCGGCAGTGCCGACCTGAAGAACTCGGCCAGCCGGACTGTGCTCAAGCTGGTGCAGTTCCTGCAGCTCAACCCGCGCCGGGTAGTGCGTATTGAGGGCTATACCGACAGTACTGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4744466‑4744224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgggTTGAGCTGCAGGAACTGCACCAGCTTGAGCACAGTCCGGCTGGCCGAGTTCTTCA  >  AE015451/4744275‑4744329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.