New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4913709 = | 22 (0.550) | 4 (0.110) | 4/316 | NT | 17.5% | coding (990/1989 nt) | ccmF | holocytochrome c synthetase |
? | AE015451 | 4913769 = | 17 (0.450) | coding (930/1989 nt) | ccmF | holocytochrome c synthetase |
GCTGGCGGTGACCGAGAAACGCGGGGTGTTCAAGAGCTGGACCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4913898‑4913709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcggcggcAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGC > AE015451/4913769‑4913820 GCTGGCGGTGACCGAGAAACGCGGGGTGTTCAAGAGCTGGACCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGG < 2:435365/186‑1 GCGGGGTGTGCGAGAGCTGGCCCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACC < 1:101173/218‑1 GGTGTTCAAGAGCTGGACCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGG < 2:511887/162‑1 cGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCAAACGCGTGC < 1:3333/126‑1 TTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGC < 2:522043/143‑1 CGTTTGCCGCCGACCCGTCGCGGGGTCTGTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCA < 2:265691/115‑1 GCTGGCGGTGACCGAGAAACGCGGGGTGTTCAAGAGCTGGACCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGCTGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATCCTGTTTTTCCTGCTGTTCGTGGTCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4913898‑4913709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcggcggcAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGC > AE015451/4913769‑4913820 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |