New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4913709 = | 22 (0.550) | 4 (0.110) | 4/316 | NT | 17.5% | coding (990/1989 nt) | ccmF | holocytochrome c synthetase |
? | AE015451 | 4913769 = | 17 (0.450) | coding (930/1989 nt) | ccmF | holocytochrome c synthetase |
CACCAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACC > AE015451/4913559‑4913968 | cACCAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTc > 1:173795/1‑236 (MQ=255) aGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCca > 1:293226/1‑235 (MQ=255) tcGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTc < 1:389670/236‑1 (MQ=255) tcGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTc > 1:90892/1‑236 (MQ=255) gcggggtgtgcgagagctggcccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgccgccgacccgtcgcggggtattttcatcctgtttttcctgctgttcgtggtcggcggcAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTAcc < 1:101173‑M2/48‑1 (MQ=255) tgttgGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCa > 1:216569/1‑210 (MQ=255) gCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGt > 1:371954/1‑236 (MQ=255) gCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGt > 1:723392/1‑236 (MQ=255) tcagcagcagCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTc < 2:584590/235‑1 (MQ=255) cagcagcagCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACgg < 2:293225/233‑1 (MQ=255) cgcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgccgccgacccgtcgcggggtattttcatcctgtttttcctgctgttcgtggtcggcggcAAACGCGTGc < 1:3333‑M2/10‑1 (MQ=255) gctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGaa < 2:522043‑M1/91‑1 (MQ=255) tgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAACAGACCCCGCGACGGGTCGGCGGCAAAcg < 2:265691‑M1/65‑1 (MQ=255) ggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGGCCAGCTCTCGCACACCCcgc < 1:101173‑M1/170‑1 (MQ=255) ttccggagtgctgacctcggtgcacgcgtttgccgccgacccgtcgcggggtattttcatcctgtttttcctgctgttcgtggtcggcggcAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCcagc < 2:522043‑M2/52‑1 (MQ=255) gggcgcggAGGGCGAAGAGGGTGAGCGAGCCGCCGGCCACGAACAGCAGGAAAAGCAGGATGAAAATCCCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACg < 2:231124/119‑1 (MQ=255) gTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACA‑CCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGc < 1:525223/236‑1 (MQ=255) cgcAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTc < 2:480/174‑1 (MQ=255) ggCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTc < 2:666414/169‑1 (MQ=255) gcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGgcg < 1:3333‑M1/117‑2 (MQ=255) cgtttgccgccgacccgtcgcggggtctgttcatcctgtttttcctgctgttcgtggtcggcggcAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCca < 2:265691‑M2/50‑1 (MQ=255) CCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACAcc < 2:511887‑M1/162‑1 (MQ=255) CCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGc < 2:435365‑M1/186‑1 (MQ=255) gAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGccg > 2:591635/1‑166 (MQ=255) gAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCaa > 2:348006/1‑199 (MQ=255) aaaCCGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAaccacc < 2:530104/236‑1 (MQ=255) aCAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGGACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCa < 2:46365/174‑1 (MQ=255) cGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGAACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATGGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGaa < 1:56149/207‑1 (MQ=255) | CACCAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTGGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACGGTCCAGCTCTTGAACACCCCGCGTTTCTCGGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACC > AE015451/4913559‑4913968 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |