New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5221246	37 (0.930)	3 (0.080)	3/320	NT	7.8%	coding (372/888 nt)	PP_4601	Transcriptional regulator, LysR family
	?	AE015451	= 5221248	36 (0.950)					coding (374/888 nt)	PP_4601	Transcriptional regulator, LysR family

CTGGTGCTGGTCAAGCGGGGCCAGCGCTTCGAAGGTTTCACCGAGGCCGGCGAGCGCATCCTGGCCTGGGCCCGTACCCTGCTCGCCGCCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCTGCTGCCCCTGCGCGAAAAATACCCCGAACTGCACTTTCAGCTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5221007‑5221246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcagcGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCG  <  AE015451/5221248‑5221061                                                                                                                                                                                                                                                                                                                                                                                                                                              CTGGTGCTGGTCAAGCGGGGCCAGCGCTTCGAAGGTTTCACCGAGGCCGGCGAGCGCATCCTGGCCTGGGCCCGTACCCTGCTCGCCGCCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCTGCTGCCCCTGCGCGAAAAATACCCCGAACTGCACTTTCAG                                                                                                                                                                                                    <  2:563759/234‑1                                                                                                                                                      ccgGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCTGCTGCCCCTGCGCGAAAAATACCCCGAACTGCACTTTCAGCTCAGCGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGG                                                                                                                                                   <  2:403865/131‑1                                                                                                                                                                                             CCTGCTGCTGCCCCTGCGCGAAAAATACCCCGAACTGCACTTTCAGCTCAGCGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAG                             <  1:58882/213‑1                                                                                                                                                                                                         CCTGCGCGAAAAATACCCCGAACTGCACTTTCAGCTCAGCGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCCGCCTCGGCCTGCAGGCCGTCCTGGG                                    >  2:58882/1‑194                                                                                                                                                                                                                                            TCAGCGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCG  >  2:313965/1‑193                                                                                                                                                                                                                                              AGCGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCGCGGCCGGCAGGCCGTCAa                                       >  2:186531/1‑153                                                                                                                                                                                                                                                                                                                                                                                                                                              CTGGTGCTGGTCAAGCGGGGCCAGCGCTTCGAAGGTTTCACCGAGGCCGGCGAGCGCATCCTGGCCTGGGCCCGTACCCTGCTCGCCGCCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCTGCTGCCCCTGCGCGAAAAATACCCCGAACTGCACTTTCAGCTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5221007‑5221246 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcagcGAGCTGAGCTGAAAGTGCAGTTCGGGGTATTTTTCGCGCAGGGGCAGCAGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCG  <  AE015451/5221248‑5221061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.