New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 561201434 (0.850)5 (0.130) 5/320 NT 13.1% coding (1008/1176 nt) PP_4931 conserved protein of unknown function
?AE015451 = 5612017 34 (0.890)coding (1011/1176 nt) PP_4931 conserved protein of unknown function

CCCATCCGGCAGCCGATGGCCAGTGGGTCTGGTACCTCGGTGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5611779‑5612014
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcagGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCGCACCAGGCTCTGATCGACCCATGGCAGCAGGTTGTCGATTTCCTTCTGCGCTGCGGCAATCTGCGCTGCAGGCTCGCGCGCCACGCCATCGGCTTCGGCCAGGTCCCCA  <  AE015451/5612017‑5611819
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
CCCATCCGGCAGCCGATGGCCAGTGGGTCTGGTACCTCGGTGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGC                                                                                                                                                                                                           <  2:472214/234‑1
                                       GTGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGAC                                                                                                                                                                                                               >  2:281833/1‑191
                                                                                                                                                     CGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGC                                                                                                                                                                                                           >  1:717840/1‑85
                                                                                                                                                     CGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGC                                                                                                                                                                                                           <  2:717839/85‑1
                                                                                                                                                                  TGCGCGTCGACCGCGCTGAGCCTGCACAATCCGCCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCCGGCGCCGCTGGTCGGCAGGGAAGGCGTTGTCCGGGCGTGCCAGGCCG                                                                                                                                                           >  2:401417/1‑120
                                                                                                                                                                       GTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGC                                                                                                                >  1:273592/1‑158
                                                                                                                                                                       GTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCA                                                                                                                                                                                                             <  1:548651/65‑1
                                                                                                                                                                       GTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCA                                                                                                                                                                                                             >  2:548650/1‑65
                                                                                                                                                                                                  GGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCG                                                                                                               <  1:342615/132‑1
                                                                                                                                                                                                  GGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCG                                                                                                               >  2:342614/1‑132
                                                                                                                                                                                                            GCCCGGACAACGCCTTCCTTGCCGACCAGCAGGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCGCACCAGGCTCTGAT                                                                                                 >  1:561912/1‑136
                                                                                                                                                                                                                                      CAGCAGGCGCGGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAAGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCGCACCAGGCTCTGATCGACCCATGGCAGCAGGTTGTCGATTTCCTTCTGCGCTGCGGCAATCTGCGCTGCAGGCTCGCGCGCCACGCCATCGGCTTCGGCCAGGTCCCCA  <  1:561411/205‑1
                                                                                                                                                                                                                                         gcGGCGCTGCTGGTCGGCAAGGAAGGCGGTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCGCACCAGGCTCTGATCGACCCATGGCAGCAGGTTGTCGATTTCCTTCT                                                                <  2:11482/138‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
CCCATCCGGCAGCCGATGGCCAGTGGGTCTGGTACCTCGGTGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5611779‑5612014
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcagGCGCTGCTGGTCGGCAAGGAAGGCGTTGTCCGGGCGTGCCAGGCCGGATTGTGCAGGCTCAGCGCGGTCGACGCGCAGTGTGGCCCAGCGCACCAGGCTCTGATCGACCCATGGCAGCAGGTTGTCGATTTCCTTCTGCGCTGCGGCAATCTGCGCTGCAGGCTCGCGCGCCACGCCATCGGCTTCGGCCAGGTCCCCA  <  AE015451/5612017‑5611819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.