New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5612014	34 (0.850)	5 (0.130)	5/320	NT	13.1%	coding (1008/1176 nt)	PP_4931	conserved protein of unknown function
	?	AE015451	= 5612017	34 (0.890)					coding (1011/1176 nt)	PP_4931	conserved protein of unknown function

TGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCC  >  AE015451/5611819‑5612230                                                                                                                                                                                                       |                                                                                                                                                                                                                      tGGGGTCCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGcc                                                                                                                                                                                                      <  1:260230/216‑1 (MQ=255) tGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCTTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCCGCGCctgctg                                                                                                                                                                                                                 <  1:561411‑M2/205‑7 (MQ=255)                        gcgtggcgCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTaa                                                                                                                                                             <  2:708833/234‑1 (MQ=255)                         cgtggcgCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTaa                                                                                                                                                             <  2:657370/233‑1 (MQ=255)                               tcgcgAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCCAactg                                                                                                                                                                                            >  2:309223/2‑196 (MQ=255)                                           aGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGGGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCaa                                                                                                                                                                                                >  1:230983/1‑180 (MQ=255)                                                  aTTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCCTTc                                                                                                                                  >  1:138324/1‑235 (MQ=255)                                                     gCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTc                                                                                                                               >  1:362543/1‑235 (MQ=255)                                                               agAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACACCGCCTTCCTTGCCGACCAGCAGCGCcgc                                                                                                                                                                                                                    <  2:11482‑M2/140‑4 (MQ=255)                                                                         cGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGca                                                                                                                       >  1:729772/1‑223 (MQ=255)                                                                                                aTCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCctgctggtcggcaaggaaggcgttgtccgggc                                                                                                                                                                                       >  1:561912‑M2/1‑104 (MQ=255)                                                                                                   agagCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTgg                                                                                  >  2:347570/1‑234 (MQ=255)                                                                                                   agagCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGc                                                                                >  1:627721/1‑236 (MQ=255)                                                                                                              cgcTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCctgctggtcggcaaggaaggcgttgtccgggcgtgccaggcc                                                                                                                                                                             <  1:342615‑M2/132‑43 (MQ=255)                                                                                                              cgcTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCctgctggtcggcaaggaaggcgttgtccgggcgtgccaggcc                                                                                                                                                                             >  2:342614‑M2/1‑90 (MQ=255)                                                                                                               gcTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCctgctggtcggcaaggaaggcgttgtccgggcgtgccaggccggattgtgcaggctcagcgcggtcgac                                                                                                                                                  >  1:273592‑M2/1‑89 (MQ=255)                                                                                                                            gcgcGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGCCCGACCTGACCGACCTGCCACGCCCTCCGCTg                                                                                   >  1:220548/1‑208 (MQ=255)                                                                                                                                gTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTACTCAGCCACCTGGAGCGCGAc                                                                                                                                         >  2:46633/1‑150 (MQ=255)                                                                                                                                gTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGAc                                                                                                                                         >  2:374566/1‑150 (MQ=255)                                                                                                                                gTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGcc                                                      >  1:304480/1‑233 (MQ=255)                                                                                                                                gTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCAGACAACGCCTTCCTTGCCGACTAGTAGCGCCTGCTGGAGGGCTGGCCGACCAAactggcac                                                                                                                                                                                        >  2:290768/1‑103 (MQ=255)                                                                                                                                 tCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCGGACCTgacc                                                                                                        >  2:337074/1‑182 (MQ=255)                                                                                                                                  cGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTAcc                                                                           >  2:506950/1‑210 (MQ=255)                                                                                                                                  cGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTAcc                                                                           <  1:506951/210‑1 (MQ=255)                                                                                                                                        cgcTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCCCTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCAGTCGTCcac                                                                                                                            >  2:44458/1‑155 (MQ=255)                                                                                                                                              gCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTgacc                                                                                                        <  2:644051/169‑1 (MQ=255)                                                                                                                                                       aTCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGc                                                                                <  1:680125/184‑1 (MQ=255)                                                                                                                                                          cGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACGAGCAGCGCCTGGTGGTGGGCTGGCCGACCAAGCTTGCACTTGCACCGGACTTccg                                                                                                                                                                        >  2:640789/1‑91 (MQ=255)                                                                                                                                                          cGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTcc                          <  1:499041/235‑1 (MQ=255)                                                                                                                                                          cGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCGGCACGCATTcc                          >  1:331088/1‑235 (MQ=255)                                                                                                                                                          cGGCCTGGCACGCCCGGACAACGCCTTCCCTGCCGACCAGCGGCGCcggctggtcggcaaggaaggcgttgtccgggcgtgccagggcggattgtgcaggctcagcgcggtcgacgcgca                                                                                                                                             >  2:401417‑M2/1‑46 (MQ=255)                                                                                                                                                              cTGGCGCGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGc                     <  1:185777/236‑1 (MQ=255)                                                                                                                                                              cTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGc                     <  1:347571/236‑1 (MQ=255)                                                                                                                                                                   aCGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGcc                                                      >  2:512395/1‑198 (MQ=255)                                                                                                                                                                     gCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAg                                                                                                                                                                        >  2:498453/1‑82 (MQ=255)                                                                                                                                                                     gCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCTCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCAt                                                    >  2:237009/1‑198 (MQ=255)                                                                                                                                                                              aCGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGgcagca        <  1:46633/233‑1 (MQ=255)                                                                                                                                                                                  cttccttGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGcc  <  1:587899/235‑1 (MQ=255)                                                                                                                                                                                   ttccttGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTggc                                                                                 >  2:297600/1‑154 (MQ=255)                                                                                                                                                                                      cttGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGc                     <  2:289621/212‑1 (MQ=255)                                                                                                                                                                                        tGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACATGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCaa                                                              >  1:5442/1‑169 (MQ=255)                                                                                                                                                                                                     cgcCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGTCGTAc                                                                            >  2:140387/1‑142 (MQ=255)                                                                                                                                                                                                       |                                                                                                                                                                                                                      TGGGGACCTGGCCGAAGCCGATGGCGTGGCGCGCGAGCCTGCAGCGCAGATTGCCGCAGCGCAGAAGGAAATCGACAACCTGCTGCCATGGGTCGATCAGAGCCTGGTGCGCTGGGCCACACTGCGCGTCGACCGCGCTGAGCCTGCACAATCCGGCCTGGCACGCCCGGACAACGCCTTCCTTGCCGACCAGCAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCC  >  AE015451/5611819‑5612230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.