New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5783602 =	42 (1.050)	4 (0.100)	4/322	NT	10.0%	coding (2077/3309 nt)	kefA	mechanosensitive channel protein, intermediate (smaller, MscS‑like) conductance, K+ efflux
	?	AE015451	5783631 =	32 (0.840)					coding (2106/3309 nt)	kefA	mechanosensitive channel protein, intermediate (smaller, MscS‑like) conductance, K+ efflux

ATGAGTCGATCGGTAAGCTTCAGTGCCGTGTAGTAGTAGCCGAAGCACACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5783654‑5783602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacggcACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGCGCGGCCTGTCGGTGGCTGCACGGCGCCTGGCCTACCAGCGTGCGTTGACCAAGCGTGCGGCGGCCAAGGAAGGGCT  >  AE015451/5783631‑5783783                                                                                                                                                                                                                ATGAGTCGATCGGTAAGCTTCAGTGCCGTGTAGTAGTAGCCGAAGCACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGCGCGGCCTGTCGGTGGCTGCACGGCGCCTGGCCTACCAGCGTGCGTTGACCAAGCGTGCGGCGGCCAAGGAAGGGCT  <  1:134333/206‑1              TAAGCTTCAGTGCCGTGTAGTAGTAGCCGAAGCACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGCGCGGCCTGTCGGTGGCTGCACGGCGCCGGGCCTACCAGC                                       >  2:134333/1‑156                                     TAGCCGAAGCACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGT                                                                                >  1:313937/1‑92                                     TAGCCGAAGCACACGGCACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGT                                                                                <  2:313936/92‑1                                                                                                                                                                                                                ATGAGTCGATCGGTAAGCTTCAGTGCCGTGTAGTAGTAGCCGAAGCACACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5783654‑5783602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacggcACTGAAGCTTACCGATCGACTCATCTACACCCTGTACCTGCTGCTGTTCTGGTTGGTGATCGAAGCCGCCTTCGTGCGCGGCCTGTCGGTGGCTGCACGGCGCCTGGCCTACCAGCGTGCGTTGACCAAGCGTGCGGCGGCCAAGGAAGGGCT  >  AE015451/5783631‑5783783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.