New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5881075	43 (1.080)	3 (0.080)	3/318	NT	5.7%	coding (164/1368 nt)	PP_5154	putative Oxidoreductase, FAD‑binding
	?	AE015451	= 5881138	59 (1.560)					coding (101/1368 nt)	PP_5154	putative Oxidoreductase, FAD‑binding

CTTCGGCGTAGGTTTGCAGCTGGCGGGTGACGACCCCTGGCTGGCAAACCACAGTACGGTCGAAAGCATTGAAGCCAAGGATCTGGTTCATGTAGTCGAAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5880899‑5881075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgccaTCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGCGCTGGTGCCCTCTGGCGGGCGCACCGGGCTTTCTGCCGGCGCCGTGGCGGCCAATGGCGAGGTTGTCGTCGCCTTCGACTACATGAACCAGATCCTTGGCTTCAATGCTTTCGACCGTACTGTGGTTTGCCAGCCAGGGGT  <  AE015451/5881138‑5880931                                                                                                                                                                                                                                                                                                                                                                                                   CTTCGGCGTAGGTTTGCAGCTGGCGGGTGACGACCCCTGGCTGGCAAACCACAGTACGGTCGAAAGCATTGAAGCCAAGGATCTGGTTCATGTAGTCGAAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGC                                                                                                                                                                                                                      <  1:61939/173‑1            GTTTGCAGCTGGCGGGTGACGACCCCTGGCTGGCAAACCACAGTACGGTCGAAAGCATTGAAGCCAAGGATCTGGTTCATGTAGTCGAAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCCGAGGGCACCA                                                                                                                                                                                                                        >  1:593121/1‑160                                                                                                   AAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGCGCCATCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGC                                                                                                                                               <  1:647868/146‑1                                                                                                   AAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGCGCCATCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGC                                                                                                                                               >  2:647867/1‑146                                                                                                                             CGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGCGCCATCGCCGTCCCCACAACGct                                                                                                                                                                                               >  2:526490/1‑70                                                                                                                                                                               CCATCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGCGCTGGTGCCCTCTGGCGGGCGCACCGGGCTTTCTGCCGGCGCCGTGGCGGCCAATGGCGAGGTTGTCGTCGCCTTCGACTACATGAACCAGATCCTTGGCTTCAATGCTTTCGACCGTACTGTGGTTTGCCAGCCAGGGGT  <  1:747027/211‑1                                                                                                                                                                                CATCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGCGCTGGTGCCCTCTGGCGGGCGCACCGGGCTTTCTGCCGGCGCCGTGGCGGCCAATGGCGAGGTTGTCCTCGCCTTC                                                                   >  2:655397/1‑145                                                                                                                                                                                                                                                                                                                                                                                                   CTTCGGCGTAGGTTTGCAGCTGGCGGGTGACGACCCCTGGCTGGCAAACCACAGTACGGTCGAAAGCATTGAAGCCAAGGATCTGGTTCATGTAGTCGAAGGCGACGACAACCTCGCCATTGGCCGCCACGGCGCCGGCAGAAAGCCCGGTGCGCCCGCCAGAGGGCACCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5880899‑5881075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgccaTCGTCTTTCCCAAAACGATAGAACAGGTGCAAGCCATTGTGCACTGGGCCAATGCGCACAAGGTGGCGCTGGTGCCCTCTGGCGGGCGCACCGGGCTTTCTGCCGGCGCCGTGGCGGCCAATGGCGAGGTTGTCGTCGCCTTCGACTACATGAACCAGATCCTTGGCTTCAATGCTTTCGACCGTACTGTGGTTTGCCAGCCAGGGGT  <  AE015451/5881138‑5880931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.