New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 212746 = | 36 (0.900) | 3 (0.080) | 3/326 | NT | 8.0% | coding (18252/26049 nt) | PP_0168 | putative surface adhesion protein |
? | AE015451 | 212769 = | 34 (0.880) | coding (18275/26049 nt) | PP_0168 | putative surface adhesion protein |
GTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATC > AE015451/212515‑212971 | gTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAgcg < 1:386505/236‑1 (MQ=39) tGACGCTGGACAAGACGCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAcc < 1:482824/236‑1 (MQ=33) ccccGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTgcgc < 1:329894/229‑1 (MQ=17) gCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGt < 1:38100/235‑1 (MQ=32) ttACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACAcc > 1:146659/1‑203 (MQ=2) ccGACGGGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCa < 2:444131/186‑1 (MQ=14) cGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACt < 1:578039/236‑1 (MQ=35) cAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCt > 1:696460/1‑236 (MQ=34) cAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCt > 1:337227/1‑236 (MQ=33) cttcgcggccccccccagggccagtttctcgaaggtcgcaccagtggcgtccaccgccgagttgatgcccaggctgatctggccagcgtcgttgtaaacgtcatccccctgcgCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGAc > 1:131618‑M1/114‑150 (MQ=255) agaACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTcgg > 2:478526/1‑186 (MQ=35) gaACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGcc < 1:237284/235‑1 (MQ=34) cGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTgg > 2:631619/1‑234 (MQ=37) cGTCAACCAGCCGCTGGCCCACGACCTGGTCCTTATCCTGAGCAACCACACCCAAGGCACCATCAGGGCTAGCGCTACCTGCGCGCCGTACACCCACACTGCGAAGGGTGATGACGTCTGGAACGATGGTGGCCAGATCAGCCTgag > 2:442379/1‑145 (MQ=11) gTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCg > 1:261958/1‑202 (MQ=14) ccAGCCGCCGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAAc < 2:101672/184‑1 (MQ=25) cAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACCACGACGCTGGCCAGATCAGCCTGGGTATc > 2:54262/1‑144 (MQ=21) cGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTg < 1:631620/236‑1 (MQ=37) gCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGcc > 2:628038/1‑234 (MQ=37) ccACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGAc > 2:122651/1‑148 (MQ=37) gccTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATAAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTgg < 1:178755/224‑1 (MQ=25) tCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCgaga < 1:257768/159‑1 (MQ=35) tCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCAcc > 1:456141/1‑236 (MQ=35) cTGAGCAACAATGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTcg < 2:341245/120‑1 (MQ=21) cTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGt > 2:623517/1‑185 (MQ=38) gCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGt > 2:239178/1‑121 (MQ=38) atctggccagcgtcgttgtagacgtcatcaccctgcgCa > 2:493301‑M1/38‑39 (MQ=255) caacaaTGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTcgaggttc < 2:414161/121‑7 (MQ=255) caacaaCGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGc > 2:373821/1‑160 (MQ=35) aacaacGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCg > 1:146827/1‑235 (MQ=35) ggccagcgtcgttgtagacgtcatcaccctgcgCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGcc > 2:671774‑M1/34‑163 (MQ=255) ggccagcgtcgttgtagacgtcatcaccctgcgCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGcc < 1:671775‑M1/130‑1 (MQ=255) caacGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAg < 1:628039/236‑1 (MQ=35) cccAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCaa > 2:467848/1‑202 (MQ=18) cccAGGTCACCATCAAGGCCGGTGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCaa < 1:467849/202‑1 (MQ=21) aGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTACCGCGAAGGTGGATGTCAcc > 1:31181/1‑173 (MQ=25) aCCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTAc > 1:725067/1‑236 (MQ=35) aCCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTAc < 1:122651/236‑1 (MQ=35) cTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGc < 1:636202/61‑1 (MQ=35) cTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGc > 2:636201/1‑61 (MQ=37) tGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATc < 1:636668/235‑1 (MQ=37) tGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATc < 1:498092/235‑1 (MQ=38) | GTTCGAGCAACTGACGCTGGACAAGACGCCGGTCAGCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATC > AE015451/212515‑212971 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |