New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1264265 =	27 (0.680)	3 (0.080)	3/314	NT	10.1%	coding (142/1659 nt)	PP_1105	putative DNA ligase, ATP‑dependent
	?	AE015451	1264318 =	28 (0.750)					coding (89/1659 nt)	PP_1105	putative DNA ligase, ATP‑dependent

CAGGCGCTGGCGGACTTGCTCAGGCGTCAGCCCGCGCAGGGGTAGCAAGTGCTGTTCCACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGA  >  AE015451/1264035‑1264488                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                cAGGCGCTGGCGGACTTGCTCAGGCGTCAGCCCGCGCAGGGGTAGCAAGTGCTGTTCCACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGcgcc                                                                                                                                                                                                                            >  1:517117/1‑236 (MQ=255)    cggtgcccaacgggtgatggtcactcacggctcggtcgaggtactggtgcgctacctcaccgaacaaggcctggatgcccgcgccttcgtcaccgagtatggcgacgaagacgatgtgcccaacaccgccccctcgccatgaaagccttcgctacgctgttcctgcgcctggacgcgaccacctccagcaatgccaagctcgaggcactgcgcgactacttcgacatGGcgcccgc                                                                                                                                                                                                                         >  1:344159‑M1/228‑236 (MQ=255)                                                     tGTTCCACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGgc                                                                                                                                                                                                >  1:57294/1‑212 (MQ=255)                                                          cACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGgcgc                                                                                                                                                                                                                             <  2:733481/178‑1 (MQ=255)                                                          cACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGgcgc                                                                                                                                                                                                                             >  1:733482/1‑178 (MQ=255)                                                               aGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTc                                                                                                                                                               >  1:375843/1‑235 (MQ=255)                                                                 gTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgcg                                                                                                                                                            >  1:653832/1‑236 (MQ=255)                                                                   ggCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                             <  2:486059/233‑1 (MQ=255)                                                                    gCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGgc                                                                                                                                                                                                                               >  2:217103/1‑166 (MQ=255)                                                                        ggCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGc                                                                                                                                                      >  1:689801/1‑235 (MQ=255)                                                                              ccTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGGGGGCACCAGCTGGCGTGGgc                                                                                                                                                                                                                               >  1:93643/1‑156 (MQ=255)                                                                                     gCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCa                                                                                                                                         <  1:627970/235‑1 (MQ=255)                                                                                           ggCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTCCCTCGAGCTTGGCATTGCTg                                                                                                                                   >  1:538387/1‑235 (MQ=255)                                                                                                gCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAggtg                                                                                                                             <  1:519474/236‑1 (MQ=255)                                                                                                  aGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCa                                                                                                                                                                                                   <  2:387062/164‑1 (MQ=255)                                                                                                  aGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcggcgg                                                                                                                                                                                  <  2:271104/181‑1 (MQ=255)                                                                                                   gCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                             <  2:676163/201‑1 (MQ=255)                                                                                                    cGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg                                                                                                                                            <  2:375842/217‑1 (MQ=255)                                                                                                                        tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa                                                                                                       >  1:607690/1‑234 (MQ=255)                                                                                                                                                 aTAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                             <  1:42800/235‑1 (MQ=255)                                                                                                                                                            cGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGtt                                                                   >  2:457113/1‑234 (MQ=255)                                                                                                                                                              aaaaGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGc                                                                                 >  2:415146/1‑218 (MQ=255)                                                                                                                                                                       tCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTcgg                                                                                                                                                                                     <  2:697154/109‑1 (MQ=255)                                                                                                                                                                                   cgaccacctccagcaatgccaagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGTACAGCGTAGCGAAg                                                                                            <  1:387136‑M1/134‑1 (MQ=255)                                                                                                                                                                                          tcgtcgCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCt                                                      <  2:385638/217‑1 (MQ=255)                                                                                                                                                                                            ccagcaatgccaagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGGCGCGCAGAGCCTCGAGCTTGGCCTTGc                                                                                                                                     <  1:275440‑M1/93‑1 (MQ=255)                                                                                                                                                                                                ccAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGc                                                                                                                                                                                                      >  2:241000/1‑67 (MQ=255)                                                                                                                                                                                                ccAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                             <  1:406568/188‑1 (MQ=255)                                                                                                                                                                                                ccAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACAGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                             >  2:406567/1‑188 (MQ=255)                                                                                                                                                                                                    ttCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGt                                                        <  1:309124/205‑1 (MQ=255)                                                                                                                                                                                                    gtcgctgaGAAGGCGGGGGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCtt                                                                                        <  1:61860/166‑1 (MQ=255)                                                                                                                                                                                                      caagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGGGCTTGGCCTTGCTGGAGGAGGTCGcgtgc                                                                                                                    <  1:244848‑M1/110‑3 (MQ=255)                                                                                                                                                                                                       gcgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGca                                                              <  1:250193/196‑1 (MQ=255)                                                                                                                                                                                                                            cAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTATTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGa  <  1:415147/235‑1 (MQ=255)                                                                                                                                                                                                                                gggCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCt                                                      <  1:254753/178‑1 (MQ=255)                                                                                                                                                                                                                                  ccGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                             <  1:117817/73‑1 (MQ=255)                                                                                                                                                                                                                                     tGGGCGCGCGCCGGCCAGGAAATACGCCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGGAGTAGTCGCGCAGTGCCTCGAGCTTGGCGTTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCt                                                                                         <  2:119875/139‑1 (MQ=255)                                                                                                                                                                                                                                       GGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAg                                                                                                            >  2:638507‑M1/1‑118 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                CAGGCGCTGGCGGACTTGCTCAGGCGTCAGCCCGCGCAGGGGTAGCAAGTGCTGTTCCACCCAGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGA  >  AE015451/1264035‑1264488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.