New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1264265 =	27 (0.680)	3 (0.080)	3/314	NT	10.1%	coding (142/1659 nt)	PP_1105	putative DNA ligase, ATP‑dependent
	?	AE015451	1264318 =	28 (0.750)					coding (89/1659 nt)	PP_1105	putative DNA ligase, ATP‑dependent

AGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCGTGAGTGACCATCACCCGTTGGGCACCG  >  AE015451/1264097‑1264544                                                                                                                                                                                                                              |                                                                                                                                                                                                                                   aGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTc                                                                                                                                                                                                                       >  1:375843/1‑235 (MQ=255)   gTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgcg                                                                                                                                                                                                                    >  1:653832/1‑236 (MQ=255)     ggCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                                                                                     <  2:486059/233‑1 (MQ=255)          ggCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGc                                                                                                                                                                                                              >  1:689801/1‑235 (MQ=255)                       gCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCa                                                                                                                                                                                                 <  1:627970/235‑1 (MQ=255)                             ggCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTCCCTCGAGCTTGGCATTGCTg                                                                                                                                                                                           >  1:538387/1‑235 (MQ=255)                                  gCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAggtg                                                                                                                                                                                     <  1:519474/236‑1 (MQ=255)                                     gCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                                                                                     <  2:676163/201‑1 (MQ=255)                                      cGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg                                                                                                                                                                                                    <  2:375842/217‑1 (MQ=255)                                                          tctcGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACa                                                                                                                                                               >  1:607690/1‑234 (MQ=255)                                                                                   aTAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                                                                                     <  1:42800/235‑1 (MQ=255)                                                                                        cttcgctacgctgtacctgcgcctggacgcgaccacctccagcaatgccaagctcgaggcactgcgcgactacttcgacatggcgcccgccgaagatgctgcctgggcggtgtatttcctggccggcgggcgccATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTcg                                                                                                                                                                                 <  1:387136‑M2/52‑1 (MQ=255)                                                                                              cGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGtt                                                                                                                           >  2:457113/1‑234 (MQ=255)                                                                                                aaaaGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGc                                                                                                                                         >  2:415146/1‑218 (MQ=255)                                                                                                                gcacgcgacctcctccagcaaggccaagcccgaggcactgcgcgactacttcgacatggcgcccgccgaagatgctgcctgggcggtgtatttcctggccggcgggcgccATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTg                                                                                                                                                                                                    <  1:244848‑M2/33‑1 (MQ=255)                                                                                                                     cgaccacctccagcaatgccaagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGTACAGCGTAGCGAAg                                                                                                                                                    <  1:387136‑M1/134‑1 (MQ=255)                                                                                                                            tcgtcgCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCt                                                                                                              <  2:385638/217‑1 (MQ=255)                                                                                                                              ccagcaatgccaagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGGCGCGCAGAGCCTCGAGCTTGGCCTTGc                                                                                                                                                                                             <  1:275440‑M1/93‑1 (MQ=255)                                                                                                                                 gcaaggccaagctcgaggctctgcgcgcctacttcgacatggcgcccgccgaagatgctgcctgggcggtgtatttcctggccggcgggcgccATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTgg                                                                                                                                                                                          <  1:275440‑M2/43‑1 (MQ=255)                                                                                                                                  ccAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                                                                                     <  1:406568/188‑1 (MQ=255)                                                                                                                                  ccAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACAGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAgg                                                                                                                                     >  2:406567/1‑188 (MQ=255)                                                                                                                                      ttCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGt                                                                                                                <  1:309124/205‑1 (MQ=255)                                                                                                                                      gtcgctgaGAAGGCGGGGGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCtt                                                                                                                                                <  1:61860/166‑1 (MQ=255)                                                                                                                                        caagctcgaggcactgcgcgactacttcgacatGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGGGCTTGGCCTTGCTGGAGGAGGTCGcgtgc                                                                                                                                                                            <  1:244848‑M1/110‑3 (MQ=255)                                                                                                                                         gcgTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGca                                                                                                                      <  1:250193/196‑1 (MQ=255)                                                                                                                                                              cAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTATTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGa                                                          <  1:415147/235‑1 (MQ=255)                                                                                                                                                                  gggCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCt                                                                                                              <  1:254753/178‑1 (MQ=255)                                                                                                                                                                    ccGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTcgc                                                                                                                                                                                                                     <  1:117817/73‑1 (MQ=255)                                                                                                                                                                       tGGGCGCGCGCCGGCCAGGAAATACGCCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGGAGTAGTCGCGCAGTGCCTCGAGCTTGGCGTTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCt                                                                                                                                                 <  2:119875/139‑1 (MQ=255)                                                                                                                                                                         GGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAg                                                                                                                                                                    >  2:638507‑M1/1‑118 (MQ=255)                                                                                                                                                                          GCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGcc                                                                     >  1:163844‑M1/1‑212 (MQ=255)                                                                                                                                                                                            aTACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCgtg                           <  1:504801/236‑1 (MQ=255)                                                                                                                                                                                                gccGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTa                                                      <  2:531748/204‑1 (MQ=255)                                                                                                                                                                                                  cGCCCAGGCAGCGTCTTCGGCGGGCGCCATGTCGAAGTAGTCGGGCAGTGCCTCGAGCTTGGCATTGCTGGAGGGGGTCGCGTCCAGGCGCAGGAACGCCGTAGCGAAGGCTTTCATGGCGAGGGGCCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGcc                                                                     <  2:417220/188‑1 (MQ=255)                                                                                                                                                                                                     ccAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCGTGAGTGACCAt                  <  1:196077/236‑1 (MQ=255)                                                                                                                                                                                                       aGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAg                                >  2:336515/1‑220 (MQ=255)                                                                                                                                                                                                              aTCGTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCGTGAGTGAc                     <  1:139661/224‑1 (MQ=255)                                                                                                                                                                                                                cTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCg                                  <  2:356806/209‑1 (MQ=255)                                                                                                                                                                                                                     gcgggcgccATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCGTGAGTGACCATCACCCGTTGGGCACCg  >  1:344159‑M2/10‑236 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                                                   AGGTGGCCAGGCCTTCCTCGTTGCCATCGGCGTGCAGCGGCAGCAGCAGCGAAATGGTCTCGGCCAGGTCGCCCACGGCCTGATAGCTTTCTTCGAAAAGCCAGTCCGGCAGGCCAGCCAGCGTCGTCGCCAGTTCGCGTAGAAGGCGGGTGGGCACCAGCTGGCGTGGGCGCCCGCCGGCCAGGAAATACACCGCCCAGGCAGCATCTTCGGCGGGCGCCATGTCGAAGTAGTCGCGCAGTGCCTCGAGCTTGGCATTGCTGGAGGTGGTCGCGTCCAGGCGCAGGAACAGCGTAGCGAAGGCTTTCATGGCGAGGGGGCGGTGTTGGGCACATCGTCTTCGTCGCCATACTCGGTGACGAAGGCGCGGGCATCCAGGCCTTGTTCGGTGAGGTAGCGCACCAGTACCTCGACCGAGCCGTGAGTGACCATCACCCGTTGGGCACCG  >  AE015451/1264097‑1264544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.