New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2386077 = | 33 (0.830) | 3 (0.080) | 3/318 | NT | 7.8% | coding (1027/1215 nt) | PP_2094 | putative Nitrate‑binding protein NasS |
? | AE015451 | 2386182 = | 40 (1.060) | coding (922/1215 nt) | PP_2094 | putative Nitrate‑binding protein NasS |
GGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTATGCTGTCCAGCGGGGTGTCCAGGTAAGCGCTTGCGCTGAGCAGTT > AE015451/2385848‑2386310 | gccgagcaataccccaacagcgcccgtgcgctgatcaaggcgatcctcaccgccagccgattcatcgagcaaagcccggaaaaccgccgcagcaccgcgcaactgctcagcgcaagcgcttacctggacaccccgctggacagcatagccccccgcctgctcggccattatgaggatggcctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccacgGCCGGGc < 1:329686‑M1/7‑1 (MQ=255) acGGGCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTg > 2:474117/1‑234 (MQ=255) gggCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGt < 1:474118/235‑1 (MQ=255) tgCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTc < 1:58941/234‑1 (MQ=255) tcatcgagcaaagcccggaaaaccgccgcagcaccgcgcaactgctcagcgcaagcgcttacctggacaccccgctggacagcatagccccccgcctgctcggccattatgaggatggcctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccaagGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAgcggcg > 1:443869‑M1/169‑220 (MQ=255) gCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGGTGCTGGACCTGCCGGGCCACGCCGCGGTAGTCGGGGt > 2:19573/1‑192 (MQ=255) tCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACAt < 1:19573/233‑1 (MQ=255) caaagcccggaaaaccgccgcagcaccgcgcaactgctcagcgcaagcgcttacctggacaccccgctggacagcatagccccccgcctgctcggccattatgaggatggcctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccaagGCCGGGc < 1:460823‑M1/7‑1 (MQ=255) caaagcccggaaaaccgccgcagcaccgcgcaactgctcagcgcaagcgcttacctggacaccccgctggacagcatagccccccgcctgctcggccattatgaggatggcctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccaagGCCGGGc > 2:460822‑M1/161‑167 (MQ=255) cccAAGGCATGAAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGACTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAg < 2:477206/204‑1 (MQ=255) cAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGGGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGTTGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGt < 2:410582/216‑1 (MQ=255) gCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGt < 1:208057/195‑1 (MQ=255) cgcaactgctcagcgcaagcgcttacctggacaccccgctggacagcatagccccccgcctgctcggccattatgaggatggcctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccaagGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGGAGGGCAGGGTGGCCCgg < 1:178356‑M1/104‑1 (MQ=255) ggTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTc < 1:374373/229‑1 (MQ=255) gCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCggg > 2:711634/1‑119 (MQ=255) gCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCggg < 1:711635/119‑1 (MQ=255) tGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCg > 2:385531/1‑188 (MQ=255) cggcccAGCGGGAGCCACCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGc < 1:256400/232‑1 (MQ=255) aGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAACCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGgcgc < 1:330722/224‑1 (MQ=255) ccgctggacagcatagccccccgcctgctcggccattatgaggctggcctgcgcaaccagtggcaagacccacacgccctgcgcctgttcgaccacgGCCg < 2:66230‑M1/4‑1 (MQ=255) cATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCa > 1:699866/1‑235 (MQ=255) gATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTg > 2:730775/1‑234 (MQ=255) tgctgcGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGCCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAAAAGGCGCa > 1:574871/1‑201 (MQ=255) gctgcGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCg > 2:329685/1‑154 (MQ=255) gctgcGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGcc < 1:190489/234‑1 (MQ=255) aaGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATc > 1:567421/1‑214 (MQ=255) ctgggcaaccagtggcaagacccacacgccctgcgcctgttcgaccaagGcc < 1:342083‑M1/3‑1 (MQ=255) tctGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑gggggg > 1:130540/1‑225 (MQ=255) cGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGACGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAg > 2:320924/1‑151 (MQ=255) ccccccacgccctgcgcctgttcgaccaagGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCg > 2:178356‑M1/31‑133 (MQ=255) tCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGcccc > 1:274465/1‑180 (MQ=255) tCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAg > 2:281979/1‑206 (MQ=255) cGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCg > 2:352404/1‑140 (MQ=255) cGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTATGCTGTCCAGCGGGgtggc > 1:685125/1‑233 (MQ=255) cTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGcc < 1:91560/182‑1 (MQ=255) tccAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGCGGGGGGGCTATGCTGTCCAGc < 1:110913/221‑1 (MQ=255) tACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTATGCTGTCCAGCGGGGTGTCCAgg > 1:656313/1‑234 (MQ=255) cTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCCCATACCGTCGGGCCGGCAGGGCACGTTCGCCCGGCCTTGGGCGaa > 2:104360/1‑132 (MQ=255) cAGTGGCGGGCCCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGgcg < 2:104214/135‑1 (MQ=255) gCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGtt > 2:346381/1‑106 (MQ=255) gCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGtt < 1:346382/106‑1 (MQ=255) gACCTGCCGGGCCACGCCGAGGTAGTCGGGGGCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTAt < 1:112065/195‑1 (MQ=255) ccaagGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCa < 1:21788‑M1/177‑1 (MQ=255) cTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTATGCTGTCCAGCGGGGTGTCCAGGTAAGCGCTTGCGCTGAGCAGtt < 1:481362/236‑1 (MQ=255) | GGTGTCGTCGATCAGCAGGATGCGCAACATGTTCGTCCCCCTCACGCGCCGACACGGGCATCGGGCAACTCGCCCAAGGCATGCAAGCTGAAACTGCGGGCATAGCCGAAGGGGTCGCTGCCGTCCCAGCGGGAGCCATCGATCAGCAGGCTGCTGCGCATCGGTTGGCCTGGGCAAGCGATGCCCAGGCTCTGTGCGGCCTCGCTGTACAACTGCAGTTGCTGGACCTGCCGGGCCACGCCGAGGTAGTCGGGGTCTTCGCGCAGCAGGCCCCAGCGGCGGAACTGGGTCATGAACCACATACCGTCGGACAGGTAGGGCAGGTTGGCCCGGCCTTGGTCGAACAGGCGCAGGGCGTGTGGGTCTTGCCACTGGTTGCCCAGGCCATCCTCATAATGGCCGAGCAGGC‑GGGGGGCTATGCTGTCCAGCGGGGTGTCCAGGTAAGCGCTTGCGCTGAGCAGTT > AE015451/2385848‑2386310 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |