New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2909022 = | 34 (0.850) | 4 (0.110) | 4/318 | NT | 12.9% | coding (1416/1737 nt) | aprDA | alkaline protease secretion transporter ATP‑binding protein |
? | AE015451 | 2909058 = | 22 (0.580) | coding (1380/1737 nt) | aprDA | alkaline protease secretion transporter ATP‑binding protein |
CCAAGCATGTGCACACCCCCGTCGCGCAGCATCAGTATCTGATCGACCGCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGT > AE015451/2908795‑2909246 | aggccggcaaggtgcgcctggacggcgccgatatcttcacctggaacaaggccgaactgggcccgtggctgggctacctgccgcaggacgtggagctgttcgaaggcaccatcgccgaaaacatcgcccgctttgccgaggtggacagcgacgcggtgatccgtgccgcccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcCTGgccgc < 1:678101‑M1/8‑1 (MQ=255) cccGTCGCGCAGCATCAGTATCTGATCGACCGCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCa > 1:206805/1‑235 (MQ=255) tCTGATCGACCGCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAgaa < 1:55234/228‑3 (MQ=255) acctggaacaaggccgaactgggcccgtggctgggctacctgccgcaggacgtggagctgttcgaaggcaccatcgccgaaaacatcgcccgctttgccgaggtggacagcgacgcggtgatccgtgccgccgcagcagcggtgtacacgacatgatcctgcgcttcccgccgggttacgacacccgcCTGgccgcc < 2:448738‑M1/9‑1 (MQ=255) cgcgCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAg < 1:504681/191‑1 (MQ=255) gcgcACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGgtgt > 2:488735/1‑223 (MQ=255) agcacaTTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGgccg < 1:615673/180‑1 (MQ=255) cacaTTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGc < 2:590181/226‑1 (MQ=255) ttGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGAt < 1:227227/236‑1 (MQ=255) ggTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCgg > 2:197080/1‑200 (MQ=255) ggTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTc > 1:740360/1‑235 (MQ=255) tGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCCGGATCATg > 2:633362/1‑231 (MQ=255) gggAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGcc < 1:716184/181‑1 (MQ=255) gccgcaggacgtggagctgttcgaaggcaccatcgccgaaaacatcgcccgctttgccgaggtggacagcgacgcggtgatccgtgccgcccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcc < 2:734098‑M1/1‑1 (MQ=255) gccgcaggacgtggagctgttcgaaggcaccatcgccgaaaacatcgcccgctttgccgaggtggacagcgacgcggtgatccgtgccgcccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcc > 1:734099‑M1/149‑149 (MQ=255) caccacCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCa < 2:751561/157‑1 (MQ=255) ccaccGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCC‑GATGGCAGCCCATTGTCTGGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGGTCATGTc > 2:658838/1‑220 (MQ=255) gCCTTGAGCTCGGCGAGGGCATCGACCAAGTCTTTTTCACCCCCGTCATCGAGTTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGc < 2:121028/166‑1 (MQ=255) gCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATc < 1:333783/191‑1 (MQ=255) tCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCATAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCt < 1:197080/236‑1 (MQ=255) aGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAAt < 2:374405/129‑1 (MQ=255) aGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAAt > 1:374406/1‑129 (MQ=255) gACCACGCCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGa < 2:713511/209‑1 (MQ=255) gACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAgaagcaac < 1:72062/148‑8 (MQ=255) cAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATc < 1:267279/129‑1 (MQ=255) cAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATc > 2:267278/1‑129 (MQ=255) gTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGgt > 2:97698/1‑126 (MQ=255) gTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGaa > 1:204549/1‑129 (MQ=255) tCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCCGGCGGgggt > 2:152117/1‑106 (MQ=255) gCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGC‑GGCGATGt > 1:750757/1‑178 (MQ=255) tgcgcttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTacac < 2:678100‑M1/83‑1 (MQ=255) ttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTgcgg < 2:527318‑M1/94‑1 (MQ=255) ttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTgcgg > 1:527319‑M1/25‑118 (MQ=255) gcgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCgctgct < 1:675905/114‑1 (MQ=255) gcgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCgctgct > 2:675904/1‑114 (MQ=255) cgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGc > 1:500723/1‑236 (MQ=255) gcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCtt < 1:738447‑M1/216‑1 (MQ=255) ccAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTGCGGCGATg > 2:589859/1‑173 (MQ=255) aGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGt > 1:554940/1‑235 (MQ=255) gATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAg > 1:464473/1‑235 (MQ=255) aagCGTTGCTTCAGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTACCCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGc < 1:169186/193‑1 (MQ=255) aTGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGt < 1:488736/236‑1 (MQ=255) ggCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAg < 1:28968/227‑1 (MQ=255) gcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAg < 2:496612‑M1/61‑1 (MQ=255) cCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAACGCGGGCGATGTTTTCGGCGATGGTGCCTTCg < 2:675260‑M1/163‑1 (MQ=255) | CCAAGCATGTGCACACCCCCGTCGCGCAGCATCAGTATCTGATCGACCGCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGT > AE015451/2908795‑2909246 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |