New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2909022 =	34 (0.850)	4 (0.110)	4/318	NT	12.9%	coding (1416/1737 nt)	aprDA	alkaline protease secretion transporter ATP‑binding protein
	?	AE015451	2909058 =	22 (0.580)					coding (1380/1737 nt)	aprDA	alkaline protease secretion transporter ATP‑binding protein

GCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGTGAAGATATCGGCGCCGTCCAGGCGCACCTTGCCGGCCTGGGCCGG  >  AE015451/2908843‑2909291                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          gcgcACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGgtgt                                                                                                                                                                                                                                    >  2:488735/1‑223 (MQ=255) aaggccgaactgggcccgtggctgggctacctgccgcaggacgtggagctgttcgaaggcaccatcgccgaaaacatcgcccgctttgccgaggtggacagcgacgcggtgatccgtgccgcccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagGCGGGTGTCGTAACCCTGc                                                                                                                                                                                                                         <  1:738447‑M2/19‑1 (MQ=255)         cacaTTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGc                                                                                                                                                                                                                         <  2:590181/226‑1 (MQ=255)             ttGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGAt                                                                                                                                                                                                           <  1:227227/236‑1 (MQ=255)                    ggTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCgg                                                                                                                                                                                                                                        >  2:197080/1‑200 (MQ=255)                    ggTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTc                                                                                                                                                                                                     >  1:740360/1‑235 (MQ=255)                      tGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCCGGATCATg                                                                                                                                                                                                       >  2:633362/1‑231 (MQ=255)                                   ccaccGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCC‑GATGGCAGCCCATTGTCTGGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGGTCATGTc                                                                                                                                                                                                     >  2:658838/1‑220 (MQ=255)                                                    gCCTTGAGCTCGGCGAGGGCATCGACCAAGTCTTTTTCACCCCCGTCATCGAGTTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGc                                                                                                                                                                                                                                          <  2:121028/166‑1 (MQ=255)                                                      cgaaggcaccatcgccgaaaacatcgcccgcgttgccgaggtggacagcgacgcggtgatccgtgccgcccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagg                                                                                                                                                                                                                                           <  2:675260‑M2/1‑1 (MQ=255)                                                           gCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATc                                                                                                                                                                                                          <  1:333783/191‑1 (MQ=255)                                                             tCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCATAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCt                                                                                                                                                           <  1:197080/236‑1 (MQ=255)                                                                           gACCACGCCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGa                                                                                                                                                                        <  2:713511/209‑1 (MQ=255)                                                                                                gTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGgt                                                                                                                                                                                                                                      >  2:97698/1‑126 (MQ=255)                                                                                                               gTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGaa                                                                                                                                                                                                                    >  1:204549/1‑129 (MQ=255)                                                                                                                      tCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCCGGCGGgggt                                                                                                                                                                                                                                    >  2:152117/1‑106 (MQ=255)                                                                                                                           ccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagGCGGGTGTCGTAACCCTGCGGGaa                                                                                                                                                                                                                    >  1:527319‑M2/95‑118 (MQ=255)                                                                                                                           ccgcagcagcggtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagGCGGGTGTCGTAACCCTGCGGGaa                                                                                                                                                                                                                    <  2:527318‑M2/24‑1 (MQ=255)                                                                                                                                      gtgtacacgacatgatcctgcgcttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagGCGGGTGTCGTAACCCTGCGGGAAGCGCa                                                                                                                                                                                                               <  2:678100‑M2/29‑1 (MQ=255)                                                                                                                                                gCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGC‑GGCGATGt                                                                                                                                 >  1:750757/1‑178 (MQ=255)                                                                                                                                                       tgcgcttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTacac                                                                                                                                                                                             <  2:678100‑M1/83‑1 (MQ=255)                                                                                                                                                            ttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTgcgg                                                                                                                                                                                  >  1:527319‑M1/25‑118 (MQ=255)                                                                                                                                                            ttcccgcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTgcgg                                                                                                                                                                                  <  2:527318‑M1/94‑1 (MQ=255)                                                                                                                                                            gcgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCgctgct                                                                                                                                                                                      <  1:675905/114‑1 (MQ=255)                                                                                                                                                            gcgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCgctgct                                                                                                                                                                                      >  2:675904/1‑114 (MQ=255)                                                                                                                                                            cttcccgcagggttacgacacccgcctggccgccgatggcagcccattgtctggcggccagGc                                                                                                                                                                                                                                          <  2:496612‑M2/2‑1 (MQ=255)                                                                                                                                                             cgGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGc                                                           >  1:500723/1‑236 (MQ=255)                                                                                                                                                                 gcagggttacgacacccgcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCtt                                                        <  1:738447‑M1/216‑1 (MQ=255)                                                                                                                                                                 ccAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTGCGGCGATg                                                                                                                      >  2:589859/1‑173 (MQ=255)                                                                                                                                                                   aGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGt                                                      >  1:554940/1‑235 (MQ=255)                                                                                                                                                                        gATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAg                                                 >  1:464473/1‑235 (MQ=255)                                                                                                                                                                         aagCGTTGCTTCAGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTACCCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGc                                                                                        <  1:169186/193‑1 (MQ=255)                                                                                                                                                                         aTGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGt                                               <  1:488736/236‑1 (MQ=255)                                                                                                                                                                               ggCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAg                                                 <  1:28968/227‑1 (MQ=255)                                                                                                                                                                                  gcCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAg                                                                                                                                                                                                                   <  2:496612‑M1/61‑1 (MQ=255)                                                                                                                                                                                   cCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAACGCGGGCGATGTTTTCGGCGATGGTGCCTTCg                                                                                                             <  2:675260‑M1/163‑1 (MQ=255)                                                                                                                                                                                      GGCCGCCAGACAATGGGCTGGCATC‑GGCGGCCAGGCGGGTGTCGTAACCCGGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCGGCGGGCGGCACg                                                                                                                                                                          >  2:8018‑M1/1‑100 (MQ=255)                                                                                                                                                                                                            aTC‑GGCGGCCAGGCGGGTGTCGTAACCCCGCgg                                                                                                                                                                                                                       >  2:115198/1‑33 (MQ=255)                                                                                                                                                                                                             tC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACgg                                                                       <  2:615621/176‑1 (MQ=255)                                                                                                                                                                                                             tC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACgg                                                                       >  1:615622/1‑176 (MQ=255)                                                                                                                                                                                                                ggcggccagGCGGGTGTCGTAACCCGGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGC‑GGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGt                                               <  2:448738‑M2/188‑1 (MQ=255)                                                                                                                                                                                                                 gcggccagGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGTGAAGATATCGGCGCCGTCCAGGCGCACCTTGCCGGCCt         <  1:678101‑M2/227‑1 (MQ=255)                                                                                                                                                                                                                        gGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGc                                                                                        >  1:734099‑M2/2‑149 (MQ=255)                                                                                                                                                                                                                        gGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGc                                                                                        <  2:734098‑M2/148‑1 (MQ=255)                                                                                                                                                                                                                         gCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGTGAAGATATCGGCGCCGTCCAGGCGCACCTTGCCGGCCTGggccgg  <  2:464472/234‑1 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          GCGCACAGCACATTGGGCCGGTGGGAAATCAGCACCACCGTGGCGCCGCGTGCCTTGAGCTCGGCAAGGGCATCGACCAAGGCTTTTTCACCCACGTCATCGAGGTTGGCGTTGGGTTCGTCCAGCACCACCAGGTTGGGCTCGCCATACAGGGCGCGGGCCAGCGCGATGCGTTGCTTCTGGCCGCCAGACAATGGGCTGCCATC‑GGCGGCCAGGCGGGTGTCGTAACCCTGCGGGAAGCGCAGGATCATGTCGTGTACACCGCTGCTGCGGGCGGCACGGATCACCGCGTCGCTGTCCACCTCGGCAAAGCGGGCGATGTTTTCGGCGATGGTGCCTTCGAACAGCTCCACGTCCTGCGGCAGGTAGCCCAGCCACGGGCCCAGTTCGGCCTTGTTCCAGGTGAAGATATCGGCGCCGTCCAGGCGCACCTTGCCGGCCTGGGCCGG  >  AE015451/2908843‑2909291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.