New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4160431 =	34 (0.850)	3 (0.080)	3/320	NT	9.6%	coding (1171/1374 nt)	PP_3662	conserved protein of unknown function
	?	AE015451	4160597 =	24 (0.630)					coding (1337/1374 nt)	PP_3662	conserved protein of unknown function

CGCCTGTACGAAATCATCATTGATGACCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAC  >  AE015451/4160203‑4160635                                                                                                                                                                                                                                     |                                                                                                                                                                                                             cGCCTGTACGAAATCATCATTGATGACCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGc                                                                                                                                                                                                       >  1:296189/1‑236 (MQ=255)          acgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccggcagtgagcgagtcacctaggtgggggagctttcatgtaacccatgtgggtgatccgtacagacgctcccgtcacccggcccccgcgttcgacgggcatccatgcccgtcctcagtaaagcagcgggtcaggttgccacctgatagcacggtacatacgccgcgccgc                                                                                                                                                                                                            <  1:503002‑M1/3‑1 (MQ=255)               catcatTGATGACCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTg                                                                                                                                                                                         <  1:369020/236‑1 (MQ=255)                    ttGATGACCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGtt                                                                                                                                                                                                    >  1:298561/1‑220 (MQ=255)                          aCCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCa                                                                                                                                                                                    <  1:170355/230‑1 (MQ=255)                                        gCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCCACGTCAAGGACAAAgg                                                                                                                                                                >  1:210398/1‑236 (MQ=255)                                                                   gtgagcgagtcacctaggtgggggagctttcatgtaacccatgtgggtgatccgtacagacgctcccgtcacccggcccccgcgttcgacgggcatccatgcccgtcctcagtaaagcagcgggtcaggttgccacctgatagcacggtacatacgccgcgcCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGcc                                                                                                                                                        >  2:458263‑M1/163‑217 (MQ=255)                                                                   gtgagcgagtcacctaggtgggggagctttcatgtaacccatgtgggtgatccgtacagacgctcccgtcacccggcccccgcgttcgacgggcatccatgcccgtcctcagtaaagcagcgggtcaggttgccacctgatagcacggtacatacgccgcgcCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGcc                                                                                                                                                        <  1:458264‑M1/55‑1 (MQ=255)                                                                       gcgcgtcacctaggtgggggagctttcatgtaacccatgtgggtgatccgtagagacgctcccgtcacccggcccccgcgttcgacgggcatccatgcccgtcctcagtaaagcagcgggtcaggttgccacctgatagcacggtacatacgccgcgccgc                                                                                                                                                                                                            >  2:417900‑M1/159‑161 (MQ=255)                                                                               ttCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATc                                                                                                                           >  2:716853/1‑234 (MQ=255)                                                                                    ccgcGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGt                                                                                                                     >  1:695161/1‑235 (MQ=255)                                                                                                 gATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACt                                                                                                       <  1:277871/236‑1 (MQ=255)                                                                                                              tCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATcc                                                                                                                          <  1:300085/204‑1 (MQ=255)                                                                                                                aaCTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGcc                                                                                         <  1:483348/235‑1 (MQ=255)                                                                                                                 aCTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCgg                                                                                       <  1:716854/236‑1 (MQ=255)                                                                                                                       tgctgAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACa                                                                                                                 >  1:319275/1‑204 (MQ=255)                                                                                                                          tgAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGCCTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGa                                                                                                                                              <  1:147101/172‑1 (MQ=255)                                                                                                                               aTCGAGGAGAGCTTCCAGCGACCGTGCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGcc                                                                                                                                                        <  2:11501/157‑1 (MQ=255)                                                                                                                                  gaggagAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATtcg                                                                       >  1:507308/1‑235 (MQ=255)                                                                                                                                        agCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCACCCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCa                                                                <  1:160143/236‑1 (MQ=255)                                                                                                                                           ttCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCg                                                                                        >  1:649270/1‑209 (MQ=255)                                                                                                                                              cAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCAcc                                                           <  1:203630/235‑1 (MQ=255)                                                                                                                                                gCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCAc                                                                                                                        <  2:53374/172‑1 (MQ=255)                                                                                                                                                          gacccgacccACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTAt                                                                                                                                 >  1:567156/1‑153 (MQ=255)                                                                                                                                                          gacccgacccACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCa                                                                >  1:717237/1‑218 (MQ=255)                                                                                                                                                          gacccgacccACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCGGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGcc                                              >  1:149560/1‑236 (MQ=255)                                                                                                                                                          gacccgacccACCAGGCCAGGGCCGACCTGGGCTTGCGCCGCGAGCGGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACgg                                                                                                                      <  2:210398/164‑1 (MQ=255)                                                                                                                                                           acccgccccCCCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACt                                                                                                       <  2:145096/178‑1 (MQ=255)                                                                                                                                                                 cccACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                        <  1:524328/235‑1 (MQ=255)                                                                                                                                                                          ccATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACa                                                                                                                 <  2:567155/153‑1 (MQ=255)                                                                                                                                                                                      tGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGa                                                                                                                   >  2:744486/1‑139 (MQ=255)                                                                                                                                                                                                 cgcgAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAAc       >  1:310551/1‑236 (MQ=255)                                                                                                                                                                                                  gcgAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGa                                                                                                    <  2:649269/142‑1 (MQ=255)                                                                                                                                                                                                           cgccCCACGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAc  <  1:109161/231‑1 (MQ=255)                                                                                                                                                                                                                agcacggtacatacgccgcgcCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGcc                                                                                                            <  2:625219‑M1/99‑1 (MQ=255)                                                                                                                                                                                                                         gcggcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAc  <  1:573175/217‑1 (MQ=255)                                                                                                                                                                                                                            gcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                        >  2:495412/1‑176 (MQ=255)                                                                                                                                                                                                                            gcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                        <  1:495413/176‑1 (MQ=255)                                                                                                                                                                                                                               aaCCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGt                                >  2:14661/1‑181 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                             CGCCTGTACGAAATCATCATTGATGACCCGGCGGAAGTCGCCCGGCACATGGTCGAAGGCCTCAAAGCGGTCAAGCAGTTCCGCCGCGAGCGCAACGATGCCTTCCACTTCAACTGGCTGCTGAAGATCGAGGAGAGCTTCCAGCGACCGTTCGACCCGACCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAC  >  AE015451/4160203‑4160635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.