New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4160431 =	34 (0.850)	3 (0.080)	3/320	NT	9.6%	coding (1171/1374 nt)	PP_3662	conserved protein of unknown function
	?	AE015451	4160597 =	24 (0.630)					coding (1337/1374 nt)	PP_3662	conserved protein of unknown function

CCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGT  >  AE015451/4160363‑4160815                                                                                                                                                                                                                                           |                                                                                                                                                                                                                           cccACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                                                                                                                                                                                                            <  1:524328/235‑1 (MQ=255)                                 cgcgAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAAc                                                                                                                                                                                           >  1:310551/1‑236 (MQ=255)                                           cgccCCACGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAc                                                                                                                                                                                      <  1:109161/231‑1 (MQ=255)                                                         gcggcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAc                                                                                                                                                                                      <  1:573175/217‑1 (MQ=255)                                                            gcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                                                                                                                                                                                                            >  2:495412/1‑176 (MQ=255)                                                            gcCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                                                                                                                                                                                                            <  1:495413/176‑1 (MQ=255)                                                               aaCCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGt                                                                                                                                                                                                                    >  2:14661/1‑181 (MQ=255)                                                                                           tCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCGGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGgcggcgcgg                                                                                                                                                                                                                       <  2:388672/150‑1 (MQ=255)                                                                                                                         gCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGcc                                                                                                                                                      <  2:628771/185‑1 (MQ=255)                                                                                                                         gCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGcc                                                                                                                                                      >  1:628772/1‑185 (MQ=255)                                                                                                                              gtCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGAc                                                                                                                                                                                      <  1:126841/147‑1 (MQ=255)                                                                                                                                        ggcgctgtcaccgtggatctgatacggcccgtgttcctcgatcaggcggatgcctttgtccttgacgttgcctgcgacaatcccggaaaacgcccggcgGCGCGGCGTATGTACCGTGCt                                                                                                                                                                                                        <  2:625219‑M2/21‑1 (MQ=255)                                                                                                                                        acGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCg                                                                                                                                                                                   <  2:223732/141‑1 (MQ=255)                                                                                                                                           ggCCGTATCAGATCCACGGTGACAGCGCCGTCCTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCcggcgg                                                                                                                                                                                                                            <  2:143245/97‑1 (MQ=255)                                                                                                                                           ggCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGc                                                                                    <  2:310550/233‑1 (MQ=255)                                                                                                                                                             gTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCGCGGCGGCGCGGCGTATGTACCGTGCTATCAAGTAGCAACCTGACCCGCTGCTTTACTGa                                                                                                                                                                       >  2:676855/1‑132 (MQ=255)                                                                                                                                                                  aGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACt                                                          <  1:744487/236‑1 (MQ=255)                                                                                                                                                                   gcgcCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGCCGGGatc                                                                                                                        >  2:610921/1‑171 (MQ=255)                                                                                                                                                                   gcgcCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGCGGCAACCTGACCCGCTGCTTTAc                                                                                                                                                                          >  2:60610/1‑123 (MQ=255)                                                                                                                                                                    cgcCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTc                                                                                                                     <  2:507307/175‑1 (MQ=255)                                                                                                                                                                       cGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGGACgg                                                                                                              >  1:169213/1‑179 (MQ=255)                                                                                                                                                                                  cGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCCCACTGCCGGAg                                                   >  2:586525/1‑227 (MQ=255)                                                                                                                                                                                    ggcggatgcctttgtccttgacgttgcctgcgacaatcccggaaaacgcccggcgGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCAc                                                           <  1:458264‑M2/162‑1 (MQ=255)                                                                                                                                                                                    ggcggatgcctttgtccttgacgttgcctgcgacaatcccggaaaacgcccggcgGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCAc                                                           >  2:458263‑M2/56‑217 (MQ=255)                                                                                                                                                                                      gggCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGc                                                        >  1:346587/1‑218 (MQ=255)                                                                                                                                                                                       ggCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCAccgc                                       >  2:743763/1‑234 (MQ=255)                                                                                                                                                                                           ggCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTc                                                                 >  2:503001/1‑204 (MQ=255)                                                                                                                                                                                              tgctgcAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGaa                              <  1:137550/236‑1 (MQ=255)                                                                                                                                                                                                ctgcAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGAACACCCACATgg                                                                                                 >  2:44061/1‑167 (MQ=255)                                                                                                                                                                                                 tgcAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCggg                                                                                                                                         <  2:547633/126‑1 (MQ=255)                                                                                                                                                                                                         ttCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAACACCGAATg                    >  1:35568/1‑235 (MQ=255)                                                                                                                                                                                                                                        gcgGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGt  <  1:503002‑M2/219‑1 (MQ=255)                                                                                                                                                                                                                                        gcgGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTCTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACgcgc                                                               >  2:417900‑M2/4‑161 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                           CCCACCAGGCCATGGCCGACCTGGACTTGCGCCGCGAGCTGCCGCCCCATGAACTGGCGGCCAACCTGCGCCGGGCGTTTTCCGGGATTGTCGCAGGCAACGTCAAGGACAAAGGCATCCGCCTGATCGAGGAACACGGGCCGTATCAGATCCACGGTGACAGCGCCGTACTGGACCCGCTGGGCCGGCTGCTGCAGGCATTCGTCGACCAGCACCGGATGAAGCTGCCCGGCGGCGCGGCGTATGTACCGTGCTATCAGGTGGCAACCTGACCCGCTGCTTTACTGAGGACGGGCATGGATGCCCGTCGAACGCGGGGGCCGGGTGACGGGAGCGTCTGTACGGATCACCCACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGT  >  AE015451/4160363‑4160815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.