New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4660282 =	27 (0.680)	4 (0.110)	4/316	NT	13.0%	coding (640/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
	?	AE015451	4660363 =	28 (0.750)					coding (721/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F

ATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTGAAGAACCCAGGCCTGTGGGAACTGCCATTTGGCGTTACCGCCCGCGAATTGTTCGAAGA  >  AE015451/4660054‑4660499                                                                                                                                                                                                                                     |                                                                                                                                                                                                                          atcgaggtgctcaggcagcaggaagccggtaccggcgccgcctggctgccagcacttgagcttgaagccatcgcgcatgccaccggcgtagtcttcgaacaattcgcgggcggtaacgccaaatggcagttcccacaggcctgggttcttcaccttgccggagaagcccatcagcttggtgccgtggtcctcgctgccttcgcgggccagcgacttgtaccagtcgttGCCGtt                                                                                                                                                                                                                      <  2:692623‑M1/6‑1 (MQ=255)      ggtgctcaggcagcaggaagccggtaccggcgccgcctggctgccagcacttgagcttgaagccatcgcgcatgccaccggcgtagtcttcgaacaattcgcgggcggtaacgccaaatggcagttcccacaggcctgggttcttcaccttgccggagaagcccatcagcttggtgccgtggtcctcgctgccttcgcgggccagcgacttgtaccagtcgttGCCGt                                                                                                                                                                                                                       <  2:582054‑M1/5‑1 (MQ=255)          cGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGACACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCCACCCGCGCCCCAAGCCGCCCTTCCCTGCCGCCGTGGGc                                                                                                                                                                                                                   >  2:90778/1‑228 (MQ=255)            caggcagcaggaagccggtaccggcgccgcctggctgccagcacttgagcttgaagccatcgcgcatgccaccggcgtagtcttcgaacaattcgcgggcggtaacgccaaatggcagttcccacaggcctgggttcttcaccttgccggagaagcccatcagcttggtgccgtggtcctcgctgccttcgcgggccagcgacttgtaccagtcgttGc                                                                                                                                                                                                                          <  1:323142‑M1/2‑1 (MQ=255)                            gCAGCGAAAACCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGaa                                                                                                                                                                                         <  1:90778/236‑1 (MQ=255)                                cGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCCCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGaacaa                                                                                                                                                                                      >  1:651177/1‑235 (MQ=255)                                   aaaaCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTc                                                                                                                                                                                  <  1:111752/236‑1 (MQ=255)                                      aCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCgag                                                                                                                                                                               <  1:653325/236‑1 (MQ=255)                                        caccaCCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCga                                                                                                                                                                                <  1:69593/229‑1 (MQ=255)                                             gctgccagcacttgagcttgaagccatcgcgcatgccacctgcgtagtcttcgaacaattcgcgggcggtaacgccaaatggcagttcccacaggcctgggttcttcaccttgccggagaagcccatcagcttggtgccgtggtcctcgctgccttcgcgggccagcgacttgtaccagtcgttGCCGTTGGCGTGTGGGGCAAGCCGAcg                                                                                                                                                                                                 >  2:261212‑M1/185‑211 (MQ=255)                                               gcgcCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACg                                                                                                                                                                                    >  1:601056/1‑222 (MQ=255)                                                                  ggCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCAtcgtc                                                                                                                                                    <  1:581792/235‑1 (MQ=255)                                                                    ccgccgGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGc                                                                                                                                                                                                      >  1:331230/1‑183 (MQ=255)                                                                    ccgccgGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGc                                                                                                                                                                                                      <  2:331229/183‑1 (MQ=255)                                                                            ccgctgGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCAtcgtcg                                                                                                                                                   <  1:372779/224‑1 (MQ=255)                                                                               ctgGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGGGTGGGGCAAGCCGACGTGCGGGaa                                                                                                                                                                                         >  2:171382/1‑185 (MQ=255)                                                                                                    aGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGccc                                                                                                                  >  1:648121/1‑235 (MQ=255)                                                                                                         tttcgatttcgaGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGa                                                                                                              >  2:319642/1‑234 (MQ=255)                                                                                                                    aGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGa                                                                                                  <  1:712597/235‑1 (MQ=255)                                                                                                                        gTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGTGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACg                                                                                             <  1:392124/236‑1 (MQ=255)                                                                                                                         gtCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCGCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGt                                                                                                                                 <  1:10807/198‑1 (MQ=255)                                                                                                                                      gTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGGTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGCCGAGAccc                                                                                                                                                                           >  2:200073/1‑144 (MQ=255)                                                                                                                                          gggCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGc                                                                                                                                                                                                      <  2:128755/112‑1 (MQ=255)                                                                                                                                            gacGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGc                                                                                    <  2:535998/223‑1 (MQ=255)                                                                                                                                                 tACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGTCCCGCGAAGGCCGCGTGGACCACGGCAc                                                                                         >  2:645302/1‑215 (MQ=255)                                                                                                                                                    aTCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCa                                                                  >  1:502871/1‑235 (MQ=255)                                                                                                                                                               agaaACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCAAGGt                                                              <  1:66243/228‑1 (MQ=255)                                                                                                                                                                      gcgcTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCCACGGCACCGACTGGTACAAGGCGCTGGCCcg                                                                                                                 >  2:109981/1‑170 (MQ=255)                                                                                                                                                                           gATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCaa                                                                                                                                         >  2:626398/1‑141 (MQ=255)                                                                                                                                                                                       cgtggtcctcgctgccttcgcgggccagcgacttgtaccagtcgttGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCcgc                                                                                                                <  2:323141‑M1/108‑1 (MQ=255)                                                                                                                                                                                                        tcgcgggccagcgacttgtaccagtcgttGCCGTTGGCGTGTGGGGCAAGCCGACGCGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACa                                                                                                                              <  1:655068‑M1/94‑1 (MQ=255)                                                                                                                                                                                                         cgcgggccagcgacttgtaccagtcgttGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAg                                                                                     <  1:737605‑M1/135‑1 (MQ=255)                                                                                                                                                                                                                      ccgccCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTGAAGAACCCAGGCCTGTGGGAACTGCCATTTGGCGTTACCGCCCGCGAATTGTTCGAAGa  <  2:502870/233‑1 (MQ=255)                                                                                                                                                                                                                          ccTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTg                                                             >  2:283697/1‑170 (MQ=255)                                                                                                                                                                                                                                 tGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCa                                                                                          >  1:751503/1‑134 (MQ=255)                                                                                                                                                                                                                                 tGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCa                                                                                          <  2:751502/134‑1 (MQ=255)                                                                                                                                                                                                                                   ccgccgTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTTTCCGGCAAGGTGAAGAACCCAGGCCTGTGGGAACTGCCATTTGGCGTTACCGCCCGCGAATTGTTCGAAGa  <  1:626399/220‑1 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                          ATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGGCAAGCCGACGTGCGTGAACAACGTCGAGACCCTGTGCAACGTCCCGGCCATCGTCGCCAACGGCAACGACTGGTACAAGTCGCTGGCCCGCGAAGGCAGCGAGGACCACGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTGAAGAACCCAGGCCTGTGGGAACTGCCATTTGGCGTTACCGCCCGCGAATTGTTCGAAGA  >  AE015451/4660054‑4660499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.