New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4671163 =	34 (0.850)	3 (0.090)	3/280	NT	9.8%	intergenic (+25/+66)	nuoN/PP_4132	NADH‑quinone oxidoreductase subunit N/conserved protein of unknown function
	?	AE015451	4671191 =	27 (0.810)					intergenic (+53/+38)	nuoN/PP_4132	NADH‑quinone oxidoreductase subunit N/conserved protein of unknown function

TACTACCTGCGCGTCATGGTTACCCTGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTGGGGGAGAGTTCATGGGTCATTTCGAATTCGGCGCGCACTGACCAGCCACACGC  >  AE015451/4670944‑4671381                                                                                                                                                                                                                            |                                                                                                                                                                                                                           agagacagatttgcaatgcaccaccgaggcgtgtggctggtcagtgcgcgccgaattcgaaatgacccatgaactctcccccagcggcatgcccaacccggaagtgtacctgccttcggccaatggtgatttgcgcaaggccgccttgccgggcgcaggccagggcagtccgagtgagtgaggcacccgtgggcgcaggtagcaaaacgtgcagataaaAAAACACCCCGCCTAgg                                                                                                                                                                                                            >  1:624613‑M1/220‑236 (MQ=255)   ctacCGGCGCGTCATGGTTACCCTGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTa                                                                                                                                                                                                              <  1:492413/232‑1 (MQ=255)       cTGCGCGTCATGGTTACCCTGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGgt                                                                                                                                                                                                      >  1:290390/1‑236 (MQ=255)           gcgTCATGGTTACCCTGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGttt                                                                                                                                                                                                  >  1:64641/1‑236 (MQ=255)                                 ggTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTa                                                                                                                                                                             <  2:308763/235‑1 (MQ=255)                                    cGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGc                                                                                                                                                                                                           >  2:494428/1‑202 (MQ=255)                                    cGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGc                                                                                                                                                                                                           <  1:494429/202‑1 (MQ=255)                                                                  gCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGCTGGTTCAGCAAGCGGGCCTGCCACTTATCGGTTGATCACCCCGGCCGCCCCGGTACCAGACAACACCCCGCCTAGGCgg                                                                                                                                                                                                         >  2:11259/1‑174 (MQ=255)                                                                                cccagcggcatgcccaacccggaagtgtacctgccttcggccaatggtgatttgcgcaaggccgccttgccgggcgcaggccagggcagtccgagtgagtgaggcacccgtgggcgcaggtagcaaaacgtgcagataaaAAAACACCCCGCCTAGGCGGGGTGttt                                                                                                                                                                                                  <  2:607069‑M1/27‑1 (MQ=255)                                                                                                   gctgctGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCt                                                                                                                                       <  2:557427/207‑1 (MQ=255)                                                                                                     tgctgGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTgc                                                                                                            <  1:704925/232‑1 (MQ=255)                                                                                                        tgGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCa                                                                                                         <  2:638416/232‑1 (MQ=255)                                                                                                               cGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCt                                                                                                                                                                                          >  1:381597/1‑144 (MQ=255)                                                                                                               cGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCt                                                                                                                                                                                          <  2:381596/144‑1 (MQ=255)                                                                                                                gCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTg                                                                                                                                                                                         <  1:274102/144‑1 (MQ=255)                                                                                                                  cATTCTCGATTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGATCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAATCACCCCGCCTAGGCGGGCTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGcc                                                                                           <  1:400257/236‑1 (MQ=255)                                                                                                                          catggtgatttgcgcaaggccgccttgccgggcgcaggccagggcagtccgagtgagtgaggcacccgtgggcgcaggtagcaaaacgtgcagataaaAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACggg                                                                                                                                                               >  2:28039‑M1/99‑160 (MQ=255)                                                                                                                                tACTGGGTGTGTCCCCGCCGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCCCCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTacac                                                                             <  1:241702/236‑1 (MQ=255)                                                                                                                                        gtgtACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCactcactc                                                                                                                                                 >  2:440188/1‑160 (MQ=255)                                                                                                                                              ccGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGCTCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACggg                                                                                                                                                               <  1:586956/140‑1 (MQ=255)                                                                                                                                                gcagcaCCTACTGGCGATGGTTCAGCAAGCGGGCCTGCAACTGCTCGGTTGACCACCCCGGCAGCCCCGGTAACAGAAAACCCCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCt                                                                                                                                                                          <  1:716523/127‑1 (MQ=255)                                                                                                                                                  aGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCCAg                                                                                                                      >  2:658724/1‑177 (MQ=255)                                                                                                                                                    ccccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAg                                                                                   <  1:734556/210‑1 (MQ=255)                                                                                                                                                    ccccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAg                                                                                   >  2:734555/1‑210 (MQ=255)                                                                                                                                                    ccccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCg                                                          >  1:433974/1‑235 (MQ=255)                                                                                                                                                    ccccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGCTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCt                                                                                                                                       >  1:175786/1‑158 (MQ=255)                                                                                                                                                      ccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCactcactc                                                                                                                                                 <  2:508438/146‑1 (MQ=255)                                                                                                                                                      ccTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTgcg                                                                                                                               >  1:168267/1‑164 (MQ=255)                                                                                                                                                           tgGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCCCTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGcc                                                                                           >  1:110243/1‑195 (MQ=255)                                                                                                                                                           tgGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCt                                                                                                               >  2:678660/1‑175 (MQ=255)                                                                                                                                                                 tGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTggg                                                     >  2:716408/1‑227 (MQ=255)                                                                                                                                                                   gTTCAGCAAGCGGGCCTGCAACTGATCGGCTGATCACCCCGGCAGCCCCGGTAACAGATAACACCCCGCCTAGGCGGGGCGCTTTTTGATCTGCACGttt                                                                                                                                                                                  >  2:113889/1‑100 (MQ=255)                                                                                                                                                                            gagtgagtgaggcacccgtgggcgcaggtagcaaaacgtgcagataaaAAAACACCCCGCCtaggac                                                                                                                                                                                                          <  2:114194‑M1/19‑3 (MQ=255)                                                                                                                                                                            gagtgagtgaggcacccgtgggcgcaggtagcaaaacgtgcagataaaAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTgc                                                                                                                                                                        <  1:412940‑M1/53‑1 (MQ=255)                                                                                                                                                                            gCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGc                                                                                     >  2:298862/1‑184 (MQ=255)                                                                                                                                                                                            tCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACCCCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTggg                                                     <  1:541313/200‑1 (MQ=255)                                                                                                                                                                                                ttGATCACCACGGCAGCCCCGGTAACAGAAAACCCCCAGCCTAAGCGGGGAGttttttg                                                                                                                                                                                              >  2:634969/1‑58 (MQ=255)                                                                                                                                                                                                   gcaggtagcaaaacgtgcagataaaAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCactcactc                                                                                                                                                 <  2:412939‑M1/76‑1 (MQ=255)                                                                                                                                                                                                      cccccGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCa                                                                                                                        <  1:93119/122‑1 (MQ=255)                                                                                                                                                                                                           ggCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTGGGGGAGAGTTCATGGGTCATTTCGAATTCGGCGCGCACTGACCAGCCACACGc  >  1:445013/1‑236 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                           TACTACCTGCGCGTCATGGTTACCCTGTACCTGGTCGAGCCGAACCTGCGTCGTCACGACGCCCCGCTCAAGTGGGAACAGCGCACCGGCGGTGTCATGCTGCTGGCTATCGCCATTCTCGCTTTCGTACTGGGTGTGTACCCGCAGCCCCTGCTGGAGATGGTTCAGCAAGCGGGCCTGCAACTGATCGGTTGATCACCCCGGCAGCCCCGGTAACAGAAAACACCCCGCCTAGGCGGGGTGTTTTTTTATCTGCACGTTTTGCTACCTGCGCCCACGGGTGCCTCACTCACTCGGACTGCCCTGGCCTGCGCCCGGCAAGGCGGCCTTGCGCAAATCACCATTGGCCGAAGGCAGGTACACTTCCGGGTTGGGCATGCCGCTGGGGGAGAGTTCATGGGTCATTTCGAATTCGGCGCGCACTGACCAGCCACACGC  >  AE015451/4670944‑4671381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.