New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5257870	15 (0.380)	3 (0.080)	3/308	NT	16.3%	intergenic (‑69/+75)	PP_4634/PP_4635	putative hydrolase, alpha/beta fold family/trans‑2‑enoyl‑CoA reductase (NAD(+))
	?	AE015451	= 5257913	17 (0.460)					intergenic (‑112/+32)	PP_4634/PP_4635	putative hydrolase, alpha/beta fold family/trans‑2‑enoyl‑CoA reductase (NAD(+))

GCGGGCGTAATAGCGGCAGCGTACCGAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAG  >  AE015451/5257643‑5258073                                                                                                                                                                                                                                    |                                                                                                                                                                                                            gCGGGCGTAATAGCGGCAGCGTACCGAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAAccc                                                                                                                                                                                                      <  1:691013/235‑1 (MQ=255)                ggaGCGTACCGAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGa                                                                                                                                                                                                          <  1:96331/214‑1 (MQ=255)                   gCGTACCGAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGGTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGGACTGGCCTCTTCGCGGGTGAGcc                                                                                                                                                                                                       >  1:150888/1‑216 (MQ=255)                          gAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGcaagcccgctcccacaggttctccccctgtagg                                                                                                                                                                            <  1:460525‑M1/236‑34 (MQ=255)                          gAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAggggg                                                                                                                                                                                        <  2:705558/224‑1 (MQ=255)                                 cAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGGTGTGCGCCAAAACTAGCAAAGCTTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTAc                                                                                                                                                                                              >  2:254859/1‑211 (MQ=255)                                                           tGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCGCCTACTGGGGGAGAACCTGTGGGAGcag                                                                                                                                                                       >  1:315128/1‑206 (MQ=255)                                                                                  ccAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTAccc                                                                                                                                     >  2:190596/1‑219 (MQ=255)                                                                                  ccAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCa                                                                                                                    >  1:144887/1‑236 (MQ=255)                                                                                                cgAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGccc                                                                                                                                                               >  2:272825‑M2/1‑176 (MQ=255)                                                                                                          tCCGTCGGCCGCGGGGTGGCGAAATGGGGGAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGcccgcgaag                                                                                                                                                         >  2:430312‑M2/1‑166 (MQ=255)                                                                                                                 gCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTg                                                                                     >  1:477433/1‑236 (MQ=255)                                                                                                                                  tGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGt                                                                                                  <  2:525999/206‑1 (MQ=255)                                                                                                                                                          aCTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAg                                            >  1:589073/1‑236 (MQ=255)                                                                                                                                                                   gcATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGCTTACAGCTAGACGCAGTCGAACTTcacc                                                                                                       >  1:7181/1‑167 (MQ=255)                                                                                                                                                                               gttgtGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGcaagcccgctcccacaggttctccccctgtaggagcgg                                                                                                                                                                       <  1:18064‑M1/92‑39 (MQ=255)                                                                                                                                                                               gttgtGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGcaagcccgctcccacaggttctccccctgtaggagcgg                                                                                                                                                                       >  2:18064‑M1/1‑54 (MQ=255)                                                                                                                                                                                      gcCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGc                                                                                               >  1:217785/1‑157 (MQ=255)                                                                                                                                                                                      gcCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGc                                                                                               <  2:217785/157‑1 (MQ=255)                                                                                                                                                                                                    aGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAg  >  1:71760/1‑236 (MQ=255)                                                                                                                                                                                                                   tACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAAc                                        >  1:256366/1‑183 (MQ=255)                                                                                                                                                                                                                            ctTCGCGGGcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctacaaaatctttgctagttttggcgcacaacaacaggacatgcgccatgagtagcctcatccaacccgctcccccatttcgccaccccgcggccgacgga                                       >  2:430312‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                  gggcaagcccgctcccacaggttctccccctgtaggagcgggttcacccgcgaagaggccagtacaggctacaaaatctttgctagttttggcgcacaacaacaggacatgcgccatgagtagcctcatccaacccgctaccccatttcgccaccccgcggccgacggatacagcctcg                             >  2:272825‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                            GCGGGCGTAATAGCGGCAGCGTACCGAAGTGGCAGCGTTGATGATCACCAGCGGGCGCTGGGGATCAGGTTGGGCGTGGCGCCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAG  >  AE015451/5257643‑5258073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.