New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5257870	15 (0.380)	3 (0.080)	3/308	NT	16.3%	intergenic (‑69/+75)	PP_4634/PP_4635	putative hydrolase, alpha/beta fold family/trans‑2‑enoyl‑CoA reductase (NAD(+))
	?	AE015451	= 5257913	17 (0.460)					intergenic (‑112/+32)	PP_4634/PP_4635	putative hydrolase, alpha/beta fold family/trans‑2‑enoyl‑CoA reductase (NAD(+))

CCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGGTCACCTGTGGCCACAGGGCCTTGCAGGCGTTTTGCACGTCGTCACG  >  AE015451/5257724‑5258130                                                                                                                                                                                              |                                                                                                                                                                                                                          ccAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTAccc                                                                                                                                                                                              >  2:190596/1‑219 (MQ=255) ccAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCa                                                                                                                                                                             >  1:144887/1‑236 (MQ=255)               cgAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGccc                                                                                                                                                                                                                        >  2:272825‑M2/1‑176 (MQ=255)                         tCCGTCGGCCGCGGGGTGGCGAAATGGGGGAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGcccgcgaag                                                                                                                                                                                                                  >  2:430312‑M2/1‑166 (MQ=255)                                gCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTg                                                                                                                                              >  1:477433/1‑236 (MQ=255)                                                 tGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGt                                                                                                                                                           <  2:525999/206‑1 (MQ=255)                                                                         aCTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAg                                                                                                     >  1:589073/1‑236 (MQ=255)                                                                                  gcATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGCTTACAGCTAGACGCAGTCGAACTTcacc                                                                                                                                                                >  1:7181/1‑167 (MQ=255)                                                                                                     gcCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGc                                                                                                                                                        >  1:217785/1‑157 (MQ=255)                                                                                                     gcCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGc                                                                                                                                                        <  2:217785/157‑1 (MQ=255)                                                                                                                   aGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAg                                                           >  1:71760/1‑236 (MQ=255)                                                                                                                                  tACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAAc                                                                                                 >  1:256366/1‑183 (MQ=255)                                                                                                                                                         ccGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGcccgcgaagaggccagtacaggctacaaaatctttgctagttttggcgcacaac                                                                                                                                                                     >  2:18064‑M2/1‑38 (MQ=255)                                                                                                                                                         ccGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGcccgcgaagaggccagtacaggctacaaaatctttgctagttttggcgcacaac                                                                                                                                                                     <  1:18064‑M2/92‑55 (MQ=255)                                                                                                                                                              ccTACAGGGGGAGAACCTGTGGGAGCGGGCTTGcccgcgaagaggccagtacaggctacaaaatctttgctagttttggcgcacaacaacaggacatgcgccatgagtagcctcatccaacccgctaccccatttcgccaccccgcggccgacggatacagcctcggcggcttctgctggcgccacgcccaacctgatccccagcgcccgctggtgatcatcaacgctgccacttc                <  1:460525‑M2/236‑204 (MQ=255)                                                                                                                                                                tACAGGGGGAGAACCGGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGGCGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGaa                                                              <  2:122138/188‑1 (MQ=255)                                                                                                                                                                 aCAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGGTCACCTGTGGCCACAGGGCCTTGCAGGCGTTTTGc             <  1:190596/236‑1 (MQ=255)                                                                                                                                                                  ccgggggAGAACCTGTGGGGGCGGGCTGGCCCGCGAAGAGGGCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCCCGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAgg                                                                                                          <  1:106590/140‑1 (MQ=255)                                                                                                                                                                             ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGGTCACCTGTGGCCACAGGGCCTTGCAGGCGTTTTGCACGTCGTCACg  >  1:742933/1‑235 (MQ=255)                                                                                                                                                                               tgtgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAgtcagtca                                                                     >  1:291719/1‑166 (MQ=255)                                                                                                                                                                               tgtgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAgtcagtca                                                                     <  2:291718/166‑1 (MQ=255)                                                                                                                                                                                   gccgcgcgcTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCTAACTTCACATTTGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTCAAGGAACTGCTTCTTg                                                                                        <  1:264166/140‑1 (MQ=255)                                                                                                                                                                                              |                                                                                                                                                                                                                          CCAGCAGAAGCCGCCGAGGCTGTATCCGTCGGCCGCGGGGTGGCGAAATGGGGTAGCGGGTTGGATGAGGCTACTCATGGCGCATGTCCTGTTGTTGTGCGCCAAAACTAGCAAAGATTTTGTAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGGGAGAACCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGGTTCTCGGTGGTCACCTGTGGCCACAGGGCCTTGCAGGCGTTTTGCACGTCGTCACG  >  AE015451/5257724‑5258130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.