New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5331195 =	35 (0.880)	3 (0.080)	3/314	NT	9.7%	coding (366/1173 nt)	PP_4692	putative aspartate/tyrosine/aromatic aminotransferase
	?	AE015451	5331241 =	23 (0.620)					coding (320/1173 nt)	PP_4692	putative aspartate/tyrosine/aromatic aminotransferase

GGCCATGCCGCTCGTGGGTGGTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCC  >  AE015451/5330963‑5331423                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                     ggCCATGCCGCTCGTGGGTGGTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGc                                                                                                                                                                                                                                    >  1:569792/1‑235 (MQ=255)  gCCATGCCGCTCGTGGGTGGTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGCGGCGATTGCACGGGTAACCCGGATCGGcc                                                                                                                                                                                                                                   >  1:245358/1‑235 (MQ=255)   gggcacgacgtgatccacctggaaatcggcgagccggacttcaccacggccgcacccatcgtcgcggccggccaggccgcgctggccgcagggcacactcgctacaccgccgcacgcggtctgccggcactgcgtgaggcaattgccggtttttatgggcagcgctatggcctgaacatcgacccggaacgcatccttattacccccggtggctccggcgcgctgctgctGGCca                                                                                                                                                                                                                                  <  1:525251‑M1/5‑1 (MQ=255)              gtgggtggTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCcagc                                                                                                                                                                                                                                <  1:566114/226‑1 (MQ=255)                gggtggTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCtt                                                                                                                                                                                                                     >  2:525250/1‑235 (MQ=255)                        cTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGGCCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCGTGCCCGGGTc                                                                                                                                                                                                            >  1:269751/1‑236 (MQ=255)                                   ggcCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCcagccg                                                                                                                                                                                                                              >  1:377486/1‑205 (MQ=255)                                   ggcCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCCCCAGCAgg                                                                                                                                                                                                  >  1:122852/1‑235 (MQ=255)                                          gCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTTGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTggt                                                                                                                                                                                          <  1:404036/236‑2 (MQ=255)                                                                cGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGc                                                                                                                                                                      >  1:425483/1‑234 (MQ=255)                                                                     gggTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCcagc                                                                                                                                                                                                                                <  2:199081/171‑1 (MQ=255)                                                                     gggTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCggg                                                                                                                                                               >  1:106291/1‑236 (MQ=255)                                                                          ggCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGt                                                                                                                                                            >  1:691209/1‑234 (MQ=255)                                                                                         cAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                           <  1:276490/236‑1 (MQ=255)                                                                                                      gtgtCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTccac                                                                                                                                                                                                         >  2:98320/1‑161 (MQ=255)                                                                                                          ccTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCa                                                                                                                          >  1:17057/1‑236 (MQ=255)                                                                                                                            cAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGAt                                                                                                                                    >  1:122696/1‑208 (MQ=255)                                                                                                                             aaCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAAc                                                                                                       >  1:639747/1‑236 (MQ=255)                                                                                                                             aaCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAAc                                                                                                       >  1:282532/1‑236 (MQ=255)                                                                                                                                    tCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                           <  1:56167/193‑1 (MQ=255)                                                                                                                                     cGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTACTAAGGATGCGTTCCGGGTCGATGTTCAGGCCATa                                                                                                                        >  1:33439/1‑211 (MQ=255)                                                                                                                                         tgaggcaattgccggtttttatgggcagcgctatggcctgaacatcgacccggaacgcatccttattacccccggtggctccggcgcgctgctgctGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGgctgc                                                                                                                                                                                              <  1:268495‑M1/41‑1 (MQ=255)                                                                                                                                         tgaggcaattgccggtttttatgggcagcgctatggcctgaacatcgacccggaacgcatccttattacccccggtggctccggcgcgctgctgctGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGgctgc                                                                                                                                                                                              >  2:268494‑M1/97‑137 (MQ=255)                                                                                                                                                tGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCggg                                                                                                                                         <  2:579723/183‑1 (MQ=255)                                                                                                                                                tGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCa                                                                                     >  1:297705/1‑235 (MQ=255)                                                                                                                                                             ccGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                         <  1:76397/218‑1 (MQ=255)                                                                                                                                                                    cACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCCGGCCAGCAGCAgcg                                                                                                                                                                               <  2:349304/125‑1 (MQ=255)                                                                                                                                                                          tACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGcggcggg                                                            >  1:81389/1‑233 (MQ=255)                                                                                                                                                                                tagggCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCAAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                           <  1:166775/147‑1 (MQ=255)                                                                                                                                                                                 tGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACg                                                                                       <  1:98320/200‑1 (MQ=255)                                                                                                                                                                                  gggCCCCGCCCTCGCCCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCg                                                                                                                                                                          <  2:249537/116‑1 (MQ=255)                                                                                                                                                                                  gggCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGc                                                                             >  1:39404/1‑209 (MQ=255)                                                                                                                                                                                      cccGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                         <  2:122696/193‑1 (MQ=255)                                                                                                                                                                                           ccTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGc                                                                                                                                                                                                                   >  2:454031/1‑66 (MQ=255)                                                                                                                                                                                           ccTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGc                                                                                                                                                                                                                   <  1:454032/66‑1 (MQ=255)                                                                                                                                                                                           ccTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGgctgct                                                                                                                                                                                             <  2:326561/88‑1 (MQ=255)                                                                                                                                                                                           ccTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGgctgct                                                                                                                                                                                             >  1:326562/1‑88 (MQ=255)                                                                                                                                                                                                       gcAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGc                              >  1:39919/1‑235 (MQ=255)                                                                                                                                                                                                        cAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGtaata                                                                                                                                                        >  2:353296/1‑112 (MQ=255)                                                                                                                                                                                                                  cGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGgccggccg                   >  1:377688/1‑235 (MQ=255)                                                                                                                                                                                                                                   gctgctGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGCTGGGGGCGGcc  <  1:319771‑M1/229‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                     GGCCATGCCGCTCGTGGGTGGTTCTGGCCAGGCAGGCCAACGCCTCGCGCCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCC  >  AE015451/5330963‑5331423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.