New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5331195 =	35 (0.880)	3 (0.080)	3/314	NT	9.7%	coding (366/1173 nt)	PP_4692	putative aspartate/tyrosine/aromatic aminotransferase
	?	AE015451	5331241 =	23 (0.620)					coding (320/1173 nt)	PP_4692	putative aspartate/tyrosine/aromatic aminotransferase

CCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCCGTGGTGAAGTCCGGCTCGCCGATTTCCAGGTGGATCACGTCGTGCCC  >  AE015451/5331012‑5331470                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                      ggccgcccccagcgtcgcggccggccaggccgcgctggccgcagggcacactcgctacaccgccgcacgcggtctgccggcactgcgtgaggcaattgccggtttttatgggcagcgctatggcctgaacatcgacccggaacgcatccttattacccccggtggctccggcgcgctgctgctggccagcagcctgctggtggacccgggcaagcactggctgctggccagcagc                                                                                                                                                                                                                                  <  1:319771‑M2/6‑1 (MQ=255)               cGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGc                                                                                                                                                                                                                     >  1:425483/1‑234 (MQ=255)                    gggTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCggg                                                                                                                                                                                                              >  1:106291/1‑236 (MQ=255)                         ggCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGt                                                                                                                                                                                                           >  1:691209/1‑234 (MQ=255)                                        cAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                                                                          <  1:276490/236‑1 (MQ=255)                                                         ccTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCa                                                                                                                                                                         >  1:17057/1‑236 (MQ=255)                                                                           cAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGAt                                                                                                                                                                                   >  1:122696/1‑208 (MQ=255)                                                                            aaCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAAc                                                                                                                                                      >  1:639747/1‑236 (MQ=255)                                                                            aaCCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAAc                                                                                                                                                      >  1:282532/1‑236 (MQ=255)                                                                                   tCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                                                                          <  1:56167/193‑1 (MQ=255)                                                                                    cGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTACTAAGGATGCGTTCCGGGTCGATGTTCAGGCCATa                                                                                                                                                                       >  1:33439/1‑211 (MQ=255)                                                                                               tGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCggg                                                                                                                                                                                        <  2:579723/183‑1 (MQ=255)                                                                                               tGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCa                                                                                                                                    >  1:297705/1‑235 (MQ=255)                                                                                                            ccGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                                                                        <  1:76397/218‑1 (MQ=255)                                                                                                                   cACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCCGGCCAGCAGCAgcg                                                                                                                                                                                                                              <  2:349304/125‑1 (MQ=255)                                                                                                                         tACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGcggcggg                                                                                                           >  1:81389/1‑233 (MQ=255)                                                                                                                               tagggCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCAAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCg                                                                                                                                                                                          <  1:166775/147‑1 (MQ=255)                                                                                                                                tGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACg                                                                                                                                      <  1:98320/200‑1 (MQ=255)                                                                                                                                 gggCCCCGCCCTCGCCCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCg                                                                                                                                                                                                                         <  2:249537/116‑1 (MQ=255)                                                                                                                                 gggCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGc                                                                                                                            >  1:39404/1‑209 (MQ=255)                                                                                                                                     cccGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                                                                        <  2:122696/193‑1 (MQ=255)                                                                                                                                                      gcAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGc                                                                             >  1:39919/1‑235 (MQ=255)                                                                                                                                                       cAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGtaata                                                                                                                                                                                                       >  2:353296/1‑112 (MQ=255)                                                                                                                                                                 cGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGgccggccg                                                                  >  1:377688/1‑235 (MQ=255)                                                                                                                                                                                  gctgctGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGCTGGGGGCGGcc                                                 <  1:319771‑M1/229‑1 (MQ=255)                                                                                                                                                                                             gcagcctgctggtggacccgggcaagcactggctgctggccAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                                                                        >  2:268494‑M2/42‑137 (MQ=255)                                                                                                                                                                                             gcagcctgctggtggacccgggcaagcactggctgctggccAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCa                                                                                                                                        <  1:268495‑M2/96‑1 (MQ=255)                                                                                                                                                                                              CAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCCGTGGTGAAGTCCg                                    <  1:294416‑M1/236‑1 (MQ=255)                                                                                                                                                                                                                                 tggccAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCCGTGGTGAAGTCCGGCTCGCCGATTTCCAGGTGGATCACGTCGTGccc  <  1:525251‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                                      agcagcagcGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCCGTGGTGAAGTCCg                                    <  1:59749/196‑1 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                      CCCCAGCACGGTACCGGTCGGGTTGGCCGGCGAAGCGACCAGGGCACCGACGGTGTCCTTGTCCCAGTAGCGCTCAACCAGGTCGGCAGTCAGCTGATAGTTCACATCCGGGCCCACCGGTACCAATTGGGCCCCGCCCTCGACCAGGCGCAGGAAGTGGCGATTGCACGGGTAACCCGGATCGGCCAGCAGCCAGTGCTTGCCCGGGTCCACCAGCAGGCTGCTGGCCAGCAGCAGCGCGCCGGAGCCACCGGGGGTAATAAGGATGCGTTCCGGGTCGATGTTCAGGCCATAGCGCTGCCCATAAAAACCGGCAATTGCCTCACGCAGTGCCGGCAGACCGCGTGCGGCGGTGTAGCGAGTGTGCCCTGCGGCCAGCGCGGCCTGGCCGGCCGCGACGATGGGTGCGGCCGTGGTGAAGTCCGGCTCGCCGATTTCCAGGTGGATCACGTCGTGCCC  >  AE015451/5331012‑5331470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.