New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	923641 =	33 (0.830)	3 (0.090)	3/296	NT	9.7%	coding (1552/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein
	?	AE015451	923661 =	27 (0.770)					coding (1532/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein

GGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAA  >  AE015451/923458‑923882                                                                                                                                                                                                            |                                                                                                                                                                                                                              ggAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCggg                                                                                                                                                                                                           >  1:192350/1‑224 (MQ=255)           cgcgTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCg                                                                                                                                                                                                             >  1:534420/1‑212 (MQ=255)             cgTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCgg                                                                                                                                                                                                            <  2:482720/211‑1 (MQ=255)                              ccGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTa                                                                                                                                                                  <  1:9353/236‑1 (MQ=255)                               cGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGtt                                                                                                                                                                                                                        >  1:264994/1‑181 (MQ=255)                                    ccACGGCGCAGGTCAGCAGGGGCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTg                                                                                                                                                                                               <  2:436550/200‑1 (MQ=255)                                          cgcAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAAt                                                                                                                                                      <  1:707066/236‑1 (MQ=255)                                                tCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGc                                                                                                                                                   <  1:340108/233‑1 (MQ=255)                                                     agGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCATGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCa                                                                                                                                                                         <  2:746101/206‑1 (MQ=255)                                                       ggTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGc                                                                                                                                         <  1:14792/236‑1 (MQ=255)                                                            aGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTa                                                                                                                                                                                                         >  1:108693/1‑167 (MQ=255)                                                              gTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCggg                                                                                                                                  <  1:617248/236‑1 (MQ=255)                                                                         cGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTg                                                                                                                                                                              >  2:316407/1‑181 (MQ=255)                                                                                 tCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCggg                                                                                                                                  <  2:276032/217‑1 (MQ=255)                                                                                    aGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGAc                                                                                                            >  1:738475/1‑236 (MQ=255)                                                                                    aGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGGGCACGCGGGcc                                                                                                                                >  1:747385/1‑215 (MQ=255)                                                                                                         aggtCCATGGCGCCACCCAGCGCCTGCAGCTGGGTTGAGTTGCCGTCGCCGTGGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGt                                                                                                                                                                                                       <  2:113793/121‑1 (MQ=255)                                                                                                            tCCATGGCCCCCCCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGc                                                                                                                                                                                                              <  2:84309/114‑1 (MQ=255)                                                                                                                tcacggcgagtaccgcctgcgccaggccaacttccgctacagcgaagactacccgccagtgctgaacattggCCGGCTGGATATCCAGCCGGCCAATGTTCAGc                                                                                                                                                                                                                    >  2:315936‑M1/73‑104 (MQ=255)                                                                                                                  gCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCggga                                                                                                                                                                                       >  1:162004/1‑129 (MQ=255)                                                                                                                  gCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGt                                                                                                                                           >  2:327860/1‑175 (MQ=255)                                                                                                                    cccacccaGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCa                                                                            <  1:260889/236‑1 (MQ=255)                                                                                                                        agtaccgcctgcgccaggccaacttccgctacagcgaagactacccgccagtgctgaacattggCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTgg                                                                                                                                                                                  >  1:560661‑M1/65‑130 (MQ=255)                                                                                                                             cgcctgcgccaggccaacttccgctacagcgaagactacccgccagtgctgaacattggccggctggatatccagccggCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCg                                                                                                                                                                     >  2:638390‑M2/80‑138 (MQ=255)                                                                                                                             cgcctgcgccaggccaacttccgctacagcgaagactacccgccagtgctgaacattggCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCg                                                                                                                                                                     >  2:638390‑M1/60‑138 (MQ=255)                                                                                                                              gcCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCGCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCt                                                                   <  1:605666/235‑1 (MQ=255)                                                                                                                                          ccaacttccgctacagcgaagactacccgccagtgctgaacattggccggctggatatccagccggCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACt                                                                                                                                                                >  1:560661‑M2/67‑130 (MQ=255)                                                                                                                                           ttGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCa                                                                            <  2:423080/213‑1 (MQ=255)                                                                                                                                           ttGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCa                                                                            >  1:423081/1‑213 (MQ=255)                                                                                                                                                 tGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTg                                                                                         <  1:74050/194‑1 (MQ=255)                                                                                                                                                             tGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGGAGTCTTCTCTGt                                                                                                                                                                                              >  1:255502/1‑81 (MQ=255)                                                                                                                                                               cGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTc                                   <  1:5589/234‑1 (MQ=255)                                                                                                                                                                            gctgaacattggccggctggatatccagccggCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGa                                                                                                                                                        >  2:315936‑M2/33‑104 (MQ=255)                                                                                                                                                                                         CGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCct                                                             <  2:607017‑M1/182‑1 (MQ=255)                                                                                                                                                                                               GATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGaa  <  1:542112‑M1/235‑1 (MQ=255)                                                                                                                                                                                                            |                                                                                                                                                                                                                              GGAACAGCCTCGCGTACTGCGGCAGCAGGCCGACGTCACGGCGCAGGTCAGCAGGGTCGAGGTGGGCCATGGCGATGCCGTCCAGGCTGATCTCGCCCTGCACCAGATCCATGGCCCCACCCAGCGCCTGCAGCAAGGTTGATTTGCCGGCGCCGTTGCGGCCCAGCACGGCAATGCGCTCGCCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGGTCAGTTGGGCCAACGGCGCCATCATTCGCGATGAA  >  AE015451/923458‑923882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.