New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2468748 =	32 (0.800)	3 (0.080)	3/326	NT	9.2%	coding (175/564 nt)	PP_2162	putative phosphonoacetaldehyde phosphonohydrolase‑related protein
	?	AE015451	2468891 =	28 (0.720)					coding (32/564 nt)	PP_2162	putative phosphonoacetaldehyde phosphonohydrolase‑related protein

TGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTGCCGCCTTGATAGCAGCGCGATGTGTTG  >  AE015451/2468666‑2469088                                                                                                                                                                                                                                  |                                                                                                                                                                                                      tgccAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGt                                                                                                                                                                                             <  1:606373/236‑1 (MQ=255)            gTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAggcgggc                                                                                                                                                                                   <  1:484464/235‑1 (MQ=255)              tCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAggcgggc                                                                                                                                                                                   <  2:323438/233‑1 (MQ=255)                                          cGCATGCCCTGGCAGCCAGGCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGt                                                                                                                                                    <  1:512099/236‑1 (MQ=255)                                                            gTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGa                                                                                                                                                                                           <  1:338446/179‑1 (MQ=255)                                                                                   GTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGc                                                                                                           >  1:110153‑M1/1‑236 (MQ=255)                                                                                         tttGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAgggt                                                                                                                                           >  1:247882/1‑196 (MQ=255)                                                                                         tttGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCt                                                                                                      >  1:272135/1‑235 (MQ=255)                                                                                         tttGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTg                                                                                                     >  1:325191/1‑236 (MQ=255)                                                                                         tttGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGGGAAggcgggcg                                                                                                                                                                                  >  2:135363/1‑159 (MQ=255)                                                                                                     tGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAgt                                                                                            <  2:325190/233‑1 (MQ=255)                                                                                                               gctacccatggcgcaccatcacccgcccccggcgccctgggcacccttgccagcctgcgtcagcgccaagtgccgtgcatttggttggatgacctcaataccgcgcaaaccgaacAGTACAGCAGTGAAGGCGGACGCAGGGTCCATGGc                                                                                                                                                                     >  2:448243‑M2/116‑150 (MQ=255)                                                                                                               caaccaaATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCaa                                                                                                                                                         >  2:433919/1‑162 (MQ=255)                                                                                                               caaccaaATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTgc                                                                                                    >  2:734325/1‑215 (MQ=255)                                                                                                               caaccaaATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAata                                                                               >  1:437419/1‑236 (MQ=255)                                                                                                               caaccaaATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAata                                                                               >  1:493650/1‑236 (MQ=255)                                                                                                               caaccaaATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAat                                                                                >  1:475055/1‑235 (MQ=255)                                                                                                                          aCGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGtt                                                                                                                                                   >  1:627602/1‑157 (MQ=255)                                                                                                                          aCGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGtt                                                                                                                                                   <  2:627601/157‑1 (MQ=255)                                                                                                                            ggCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGc                                                                                                           <  2:749492/195‑1 (MQ=255)                                                                                                                                         gACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGtt                                                      <  1:283293/235‑1 (MQ=255)                                                                                                                                                           tGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTctct                                   <  1:454660/236‑1 (MQ=255)                                                                                                                                                                 gggCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACt                              <  1:241572/235‑1 (MQ=255)                                                                                                                                                                        gggggCGGGTGATGGTGCGCCATGGGTAGCCGGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTGCCGCCt                       <  1:138416/235‑1 (MQ=255)                                                                                                                                                                        cgtcagcgccaagtgccgtgcatttggttggatgacctcaataccgcgcaaagcgaacAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATc                                                                                                             <  1:600302‑M2/91‑1 (MQ=255)                                                                                                                                                                        cgtcagcgccaagtgccgtgcatttggttggatgacctcaataccgcgcaaagcgaacAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATc                                                                                                             >  2:600301‑M2/59‑149 (MQ=255)                                                                                                                                                                                             aTGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTGCCGCCTTGATAGCAGCGCGATGTGTTg  >  1:267180/1‑235 (MQ=255)                                                                                                                                                                                                        gCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGtt                                                      >  2:699312/1‑172 (MQ=255)                                                                                                                                                                                                           ccAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCa                                                                        <  2:475054/151‑1 (MQ=255)                                                                                                                                                                                                            cAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGGAAGGCTGCTTATCAGCCCGCAAGTCTCtat                                 >  1:112693/1‑189 (MQ=255)                                                                                                                                                                                                             aGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCACATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTgc                            >  1:294687/1‑193 (MQ=255)                                                                                                                                                                                                             aGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTgc                            <  2:294686/193‑1 (MQ=255)                                                                                                                                                                                                                        cAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACt                              <  1:332711/180‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                      TGCCAGCAAGCGTTCGGCGCCGGCCAGCGCACGCCATTGACCGCATGCCCTGGCAGCCAGTCGGGCAGCACATGGGCCAGGCGTTCGCTTTGCGCGGTATTGAGGTCATCCAACCAAATGCACGGCACTTGGCGCTGACGCAGGCTGGCAAGGGTGCCCAGGGCGCCGGGGGCGGGTGATGGTGCGCCATGGGTAGCCTGCACCAGGCAGCCGCGCAAACCGAACAGTACAGCAGTGAAGGCGGGCGCAGTGTCCATGGCAACTTCCCCCAAATGGTTCGAAGGCTATGCGTTGATTGTTACCGTCCTGTGACATCGCCCGCTGCGCAACAGTTGTTCACAAAATATTGAGCAAAAATGTGTAAGGCTGTTTATCAGCCCGCAAGTCTCTATACTGCCGCCTTGATAGCAGCGCGATGTGTTG  >  AE015451/2468666‑2469088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.