New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 299909	56 (0.910)	7 (0.120)	7/326	NT	12.0%	coding (1217/2586 nt)	yhgF	putative transcriptional accessory protein
	?	AE015451	= 300062	50 (0.850)					coding (1064/2586 nt)	yhgF	putative transcriptional accessory protein

AACTCGGTCACCAGCTTGTCGCTTTCGCGGCTGGCGGTACCGTTGCCAATGGCGATCAGCTCCACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/299669‑299909 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggccgACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGACCTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCACCGGCTGCAAGATCGCCGTGGTCGACGCAACCGGCA  <  AE015451/300062‑299829                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACTCGGTCACCAGCTTGTCGCTTTCGCGGCTGGCGGTACCGTTGCCAATGGCGATCAGCTCCACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCC                                                                                                                                                                                                                                                 >  1:25833/1‑236            CAGCTTGTCGCTTTCGCGGCTGGCGGTCCCGGTGCCAATGGCGATCAGCTCCACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCG                                                                                                                                                                                                                                            <  1:332711/230‑1                            CGGCTGGCTGTACCGTTGCCAATGGCGATCAGCTCCACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGT                                                                                                                                                                                                                      <  1:67561/236‑1                                                               CACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGC                                                                                                                                                                                                                                              >  2:202070/1‑177                                                                                                                         TTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATG                                                                                                                          <  1:898778/235‑1                                                                                                                          TCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGT                                                                                                                                                >  2:898777/1‑212                                                                                                                              CGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGC                                                                                                                                                               >  1:1073212/1‑193                                                                                                                              CGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGC                                                                                                                                                               <  2:1073211/193‑1                                                                                                                                              GTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCAT                                                                                                      <  1:745670/234‑1                                                                                                                                                                                              CAGCCGGTGCGCAGGCGCGGGGCGAAGCCCAGGGTGGCGCGGGGGCCGGCAGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCT                                                                                                                                                          <  2:296104/134‑1                                                                                                                                                                                                                                      GGGGGCCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGACCTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCCCACCGGCTG                               >  1:344969/1‑217                                                                                                                                                                                                                                           CCGGCCGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGACCTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCACCGGCTGCAAGATCGCCGTGGTCGACGC          >  2:421896/1‑233                                                                                                                                                                                                                                                aGACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGACCTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCACCGGCTGCAAGATCGCCGTGGTCGACGCAACCGGCA  <  2:512145/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACTCGGTCACCAGCTTGTCGCTTTCGCGGCTGGCGGTACCGTTGCCAATGGCGATCAGCTCCACCGAGTGTTTGGCGCACAGTGCGGCCATGATGGAAATGGTGCGGTCCCAGTCGTTCTTCGGCGCGTGCGGGTAGACCGTGGTGTGGTCCAGCAGTTTGCCGGTTGCGTCGACCACGGCGATCTTGCAGCCGGTGCGCAGGCCCGGGTCGAAGCCCAGGGTGGCGCGGGGGCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/299669‑299909 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggccgACAAGTGGCTGGGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGACAGTGCCGAAGGCGAGGCGATCAATGTGTTCGCCCACAACCTGCATGACCTGCTGCTGGCCGCCCCGGCCGGCCCCCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCACCGGCTGCAAGATCGCCGTGGTCGACGCAACCGGCA  <  AE015451/300062‑299829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.