New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 682075 = | 46 (0.740) | 3 (0.050) | 3/316 | NT | 6.7% | coding (1198/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
? | AE015451 | 682089 = | 41 (0.720) | coding (1184/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
CTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/682189‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCA > AE015451/682089‑682262 CTCGGTGCCATTCGCAGCCTGATCCAGCACAGCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCA < 2:66177/127‑1 GGTGCCATTCGCAGCCTGATCCAGCACAGCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTG < 2:602492/148‑1 TTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCGGCAGCTCGACCCGCGTCTCCAGCGACATGGCCGAGGCGGCCGGCCGCCcg > 2:322263/1‑105 CAGCACATCGGCACTGCTGCCAGCAAGATCCTAAGCCCGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCC < 1:360624/88‑1 CGGCACTGCTGCAAGAAAGACCCTCAGCCCGTCCAGCAGCTCTACCCGCGTCTCCAGTGACATGGCCGGGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTC < 2:1046731/110‑1 ACGTCAAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCG < 1:383302/58‑1 GGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGACCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGACCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCA > 1:505678/1‑181 CTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/682189‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCA > AE015451/682089‑682262 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |