New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1196535 =	44 (0.710)	4 (0.070)	4/328	NT	8.1%	coding (596/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ
	?	AE015451	1196595 =	49 (0.830)					coding (656/1755 nt)	xcpQ	Type II secretion pathway protein XcpQ

CCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1196598‑1196535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGT  >  AE015451/1196595‑1196733                                                                                                                                                                                                             CCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAG                           >  1:22055/1‑178  CTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGACGGCGCGGGTGCGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGACTAC                               >  2:91012/1‑173                 CCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGGGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGGACCAATGCCGTGGTCATGGT  >  1:335261/1‑187                       CGCCGGCATGGGCATGGCGCAAGTAGCTCACCGGGGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTGGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATG               <  2:335260/168‑1                                                         GGTGCTGCGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCG                                                         <  2:145645/92‑1                                                            GCTGCGAGGGCACAGCCAGGA                                                                                                                             >  2:342400/1‑21                                                                                                                                                                                                             CCTCGCAGCACCTTGACCACTTCGCCGGCATTGGCATGGCGCAAGTAGATCACCTGGGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1196598‑1196535 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgcGAGGGCTCAGCCAGGAAGGGGCGGTGCCGGTTGAAGGCGCGGGTGAGGCAGAGGGCAAGGACCGGCCGGTGGTGCCAGCCGCCGGTGGCTCGGGCATCCGCCTGGAATACGAAGAAGGTACCAATGCCGTGGTCATGGT  >  AE015451/1196595‑1196733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.