| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1464187 = | 51 (0.820) | 4 (0.070) | 4/326 | NT | 8.4% | coding (1431/1440 nt) | algX | Alginate biosynthesis protein AlgX |
| ? | AE015451 | 1464210 = | 39 (0.670) | coding (1408/1440 nt) | algX | Alginate biosynthesis protein AlgX | |||||
GTGAAGGTGTTGCAGGCCACCCTCTGGTACCTCAACGGCCGCCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1464429‑1464187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaggcaCGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGAGGTTTCCGGTTTTTCCAGCTTGATGTCCTCGTGGCGGCCG > AE015451/1464210‑1464394 GTGAAGGTGTTGCAGGCCACCCTCTGGTACCTCAACGGCCGCCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCG < 1:971737/235‑1 AGGCCACCCTCTGGTACCTCAACGGCCGCCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAG < 1:778993/227‑1 GTACCTCAACGGCCGCCACGAGGACATCAAGCTGGAAAAGCCGGAAACCTCCGCCACCGACGGCCGCTTCGTCTTCCAGATGCGGGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGC < 1:289234/212‑1 CCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGC > 1:1035895/1‑197 CCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGC < 2:1035894/197‑1 cCCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGCAAAGCGGCCCCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGC < 2:431085/165‑1 CTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCC < 1:1130117/225‑1 GGCCGCTTCTTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGG < 1:43560/186‑1 AGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGC < 2:665626/125‑1 GGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAG < 1:674102/206‑1 GCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGCGCCTGCGCAGACCGCGCA > 2:267396/1‑113 CCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGCCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACGTCGCCGTGCCTGCGCAGACCGCGCAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCT < 1:759945/145‑1 GCGCATGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCG > 1:307189/1‑143 CAGGCACGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGAGGTTTCCGGTTTTTCCAGCTTGATGTCCTCGTGGCGGCCG < 1:1126294/191‑1 AGGCCCGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGAGGTTTCCGGTTTTTCCAGCTTGATGTCCTTGTGGCGGCCG < 2:202816/190‑1 GTGAAGGTGTTGCAGGCCACCCTCTGGTACCTCAACGGCCGCCACGAGGACATCAAGCTGGAAAAACCGGAAACCTCCGACACCGACGGCCGCTTCGTCTTCCAGATGCGCGAAGACGAGGACTGGGCCAGCCAGCGCCTGCTCGCGTTCGAGGTACAGGGGCCGGAAAGCGGCACCCAGAAGGTCGAAGCCAAGCTCTGCAAACGCAACAACTTCGCCGTGCCTGCGCAGACCGCGCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1464429‑1464187‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaggcaCGGCGAAGTTGTTGCGTTTGCAGAGCTTGGCTTCGACCTTCTGGGTGCCGCTTTCCGGCCCCTGTACCTCGAACGCGAGCAGGCGCTGGCTGGCCCAGTCCTCGTCTTCGCGCATCTGGAAGACGAAGCGGCCGTCGGTGTCGGAGGTTTCCGGTTTTTCCAGCTTGATGTCCTCGTGGCGGCCG > AE015451/1464210‑1464394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |