New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 171662565 (1.050)7 (0.130) 7/304 NT 11.3% coding (573/621 nt) PP_1512 conserved protein of unknown function
?AE015451 = 1716605 52 (0.950)coding (593/621 nt) PP_1512 conserved protein of unknown function

TTCGCCTGAAGGACGGCCAGCGCATTATCCTGGCGCGTGACTGGCAGGCGGGCGGGCAGAAGGCGGAATTCTTGCGTCAGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1716384‑1716625
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccactgggcgcgcccagtggTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGATAATGCGCTGGCCGTCCTTCAGGCGAAAACCGCTG  <  AE015451/1716605‑1716376
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
TTCGCCTGCAGGACGGCCAGCGCATTATCCTGGCGCGTGACTGGCAGGCGGGCGGGCAGAAGGCGGAATTCTTGCGTCAGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCC                                                                                                                                                                                                                                              <  1:378953/236‑1
                               GGCGCGTGACTGGCAGGCGGGCGGGCAGAAGGCGGAATTCTTGCGTCCGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGC                                                                                                                                                                                                                                                   <  2:266791/200‑1
                                GCGCGTGACTGGCAGGCGGGCGGGCAGAAGGCGGAATTCTTGCGTCAGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGT                                                                                                                                                                                                                                          <  1:806013/208‑1
                                               GCGGGCGGGCAGAAGGCGGGATTCGGGCGTCAGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCC                                                                                                                                                                                                                                              <  1:171299/189‑1
                                                                                 TGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGC                                                                                                                                                                                                                                                   <  2:809362/150‑1
                                                                                               gGCGAGAGCTTCAGCACGGTGCTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGC                                                                                                                                                                                                                     <  2:351503/165‑1
                                                                                               TGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACACCGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTT                                                                                                                                                            <  1:358386/223‑1
                                                                                                 CGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAG                                                                                                                                                                                               <  1:493279/186‑1
                                                                                                            GCACGGTGCTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAG‑CTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCC                                                                                                                                                                                                                                              <  2:213718/127‑1
                                                                                                                               TTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCA                                                                                                                                                                                                                                            >  2:286398/1‑111
                                                                                                                               TTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTG                                                                                                                                                                                                                                                      >  2:816591/1‑101
                                                                                                                               TTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTG                                                                                                                                                                                                                                                      <  1:816592/101‑1
                                                                                                                                                 CAACCACTGTGACCTGGACACGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGGTCAGCACCACTGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGT                                                                                                                                                       <  2:435436/178‑1
                                                                                                                                                                                                   AGGCGAACCCGCGCACGTTGTTCAGCACCACTGGGCGCGCTCAGTGGTGCTGAGCAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTG                                                                                                                                                               <  1:1060201/120‑1
                                                                                                                                                                                                        TACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCC                                                                                                                                                                                                                                              <  2:844178/36‑1
                                                                                                                                                                                                             GCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGCTAA                                  >  1:758833/1‑235
                                                                                                                                                                                                             GCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTG                                                                                                                                                                                                                                         <  2:537767/36‑1
                                                                                                                                                                                                                CACGTTGTTCAGCACCACTGGGCGCGCCCAGTGGTGCTGCACAACGTGCGCGCGTACGCCTG                                                                                                                                                                                                            <  2:510420/62‑1
                                                                                                                                                                                                                                  TGGGCGCGCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAA                                                                                                                                         >  1:286399/1‑111
                                                                                                                                                                                                                                         GCCCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGATAATGCGCTGGCCGTCCTTCAGGCGAAAACC      >  1:978250/1‑235
                                                                                                                                                                                                                                           CCAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGATAATGCGCTGGCCGTCCGTCAGGCGAA          >  1:762848/1‑229
                                                                                                                                                                                                                                            CAGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGATAATGCGCTGGCCGTCCTTCAGGCGAAAACCGCTG  >  1:1057308/1‑236
                                                                                                                                                                                                                                             AGTGGTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAG                                                  <  1:619293/187‑1
                                                                                                                                                                                                                                                 GTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGGTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGC                                                                                   >  2:1007768/1‑150
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
TTCGCCTGAAGGACGGCCAGCGCATTATCCTGGCGCGTGACTGGCAGGCGGGCGGGCAGAAGGCGGAATTCTTGCGTCAGGTGCAGCAGGCCGCTTGCGAGAGCTTCAGCACGGTACTGGGGCCGGATTACAACGCTGCGCACCGCAACCACTTTCACCTGGACATGGGGCGCTGGCAGATCTGTCGTTAGCCTCAGGCGTACGCGCGCACGTTGTTCAGCACCACTGGGCGCGCCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1716384‑1716625
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccactgggcgcgcccagtggTGCTGAACAACGTGCGCGCGTACGCCTGAGGCTAACGACAGATCTGCCAGCGCCCCATGTCCAGGTGAAAGTGGTTGCGGTGCGCAGCGTTGTAATCCGGCCCCAGTACCGTGCTGAAGCTCTCGCAAGCGGCCTGCTGCACCTGACGCAAGAATTCCGCCTTCTGCCCGCCCGCCTGCCAGTCACGCGCCAGGATAATGCGCTGGCCGTCCTTCAGGCGAAAACCGCTG  <  AE015451/1716605‑1716376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.