New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2097456	54 (0.870)	5 (0.090)	5/324	NT	10.2%	coding (403/489 nt)	gpx	Hydroperoxy fatty acid reductase gpx1
	?	AE015451	= 2097554	37 (0.640)					coding (2336/2358 nt)	PP_1875	Sensor histidine kinase/response regulator

GACCGTGGCCTGGTGGTACTGGGCTTTCCGTGCAACCAGTTCGGCAAGCAGGAACCTGGCGATGCGCGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2097216‑2097456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcgaccATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGGCTTGGTGGTGGGGGCATAGCGCTTGACCTGGCCACTGGCCGGGTCGACCAGAAACTTGGTGAAGTTCCACTTGATCTTCTGGCTACCCAAAATACCCGGGGCGCGTT  <  AE015451/2097554‑2097391                                                                                                                                                                                                                                                                                                                                                                                                                       GACCGTGGCCTGGTGGTACTGGGCTTTCCGTGCAACCAGTTCGGCAAGCAGGAACCTGGCGATGCGCGGGAACTTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGAACAAGTGGAACTTCACCAAGTTTCT                                                                                                                                                                              <  2:616236/233‑1     GTGGCCTGGTGGTACTGGGCTTTCCGTGCAACCAGTTCGGCAAGCAGGAACCTGGCGATGCGCGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGAC                                                                                                                                                                       >  1:445273/1‑236                           TCCGTGCAACCAGTTCGGCAAGCAGGAACCTGGCGATGCGCGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGA                                                                                                                                                                        >  2:973475/1‑213                                                                GCGCGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGG                                                                                                             <  1:1130078/235‑1                                                                   CGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGA                                                                                                                                                                        <  2:1131747/173‑1                                                                         ATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTC                                                                                                                                                                          <  2:504254/165‑1                                                                              GCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGGCTTGGTGGTGGGGG                                                                                               <  1:727118/235‑1                                                                                     TGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACCATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGGCTTGGTGG                                                                                                     <  2:1099604/222‑1                                                                                                                                                                                                                                 CAAGGTTCTGGTCGACCATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTG                                                                                                              >  2:323784/1‑73                                                                                                                                                                                                                                  AAGTTTCTGGCCGACCATTGGGTTCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAAGGCCTGTGGCTTGGTGGTGCGGGCAGAGCGCCTGACCTGGCCACT                                                                         >  2:189421/1‑109                                                                                                                                                                                                                                                 CATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGGCTTGGTGGTGGGGGCATAGCGCTTGACCTGGCCACTGGCCGGGTCGACCAGAAACTTGGTGAAGTTCCACTTGATCTTCTGGCTACCCAAAATACCCGGGGCGCGTT  <  2:502987/165‑1                                                                                                                                                                                                                                                                                                                                                                                                                       GACCGTGGCCTGGTGGTACTGGGCTTTCCGTGCAACCAGTTCGGCAAGCAGGAACCTGGCGATGCGCGGGAAATTGCGCAGTTCTGCGAGCGTAATTTCGGCGTGAGTTTTCCGCTGTTTCGCAAGGTCGAGGTCAACGGCCCGGGCGCTCACCCTCTGTTCGTCGAACTCAAGCAACGCGCCCCGGGTATTTTGGGTAGCCAGAAGATCAAGTGGAACTTCACCAAGTTTCTGGTCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2097216‑2097456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcgaccATTGGGTGCCCTTCAGCGGCTGAGCAAACGCTCGATGTCCGCCTCCAGGGCCTGTGGCTTGGTGGTGGGGGCATAGCGCTTGACCTGGCCACTGGCCGGGTCGACCAGAAACTTGGTGAAGTTCCACTTGATCTTCTGGCTACCCAAAATACCCGGGGCGCGTT  <  AE015451/2097554‑2097391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.