New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2528999	50 (0.810)	4 (0.070)	4/324	NT	11.7%	intergenic (+126/‑281)	PP_2217/PP_2218	enoyl‑CoA hydratase/transposase
	?	AE015451	2530760 =	13 (0.220)					intergenic (+179/‑2)	PP_2218/PP_2219	transposase/conserved protein of unknown function

CGAGGGGGTTCGCTTTGAGCGTCGGGTCTTCCATGCGGCTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2528759‑2528999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACCG  >  AE015451/2530760‑2530983                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGAGGGGGTTCGCTTTGAGCGTCGGGTCTTCCATGCGGCTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACG                                                                                                                                                                                                                                       >  1:599462/1‑236   AGGGGGTTCGCTTTGAGCGTCGGGTCTTCCATGCGGCTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGG                                                                                                                                                                                                                                      <  1:464964/235‑1              gTTGAGCGTCGGGTCTTCCATGCGGCTTTCTCCACCGAAGACCAGAAAGAAGGCGTGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGG                                                                                                                                                                                                                                     <  1:128481/224‑1                                                                                                        AAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGG                                                                                                                                                                                                                                     <  1:857946/135‑1                                                                                                                  GATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAG                                                                                                                                                        >  1:1046610/1‑202                                                                                                                        ACTCGGTTCGTTGCCGTGGCCGTGGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAA                                                                                                                                       <  2:504945/213‑1                                                                                                                                           CCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGTAGGTGACGGGCAT                                                                                                                                                                                                                                  >  2:605969/1‑103                                                                                                                                                                                                      TCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAG                                                               <  2:787090/207‑1                                                                                                                                                                                                                                 AGGCAGGTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCACGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGAT‑‑‑‑‑‑CAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACCG  >  1:640825/1‑235                                                                                                                                                                                                                                     AGGTGACGGGCAACCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGATCAGCCTCCTGACGTCGCGAAGATCAAGATCACGATCAAGATCAAGATCAAGCTCAAGGTCAAGATCAAGATCAACGGCAA                                                                                                               >  2:916706/1‑128                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGAGGGGGTTCGCTTTGAGCGTCGGGTCTTCCATGCGGCTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2528759‑2528999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACCG  >  AE015451/2530760‑2530983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.