New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2528999	50 (0.810)	4 (0.070)	4/324	NT	11.7%	intergenic (+126/‑281)	PP_2217/PP_2218	enoyl‑CoA hydratase/transposase
	?	AE015451	2530760 =	13 (0.220)					intergenic (+179/‑2)	PP_2218/PP_2219	transposase/conserved protein of unknown function

AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACCG  >  AE015451/2530632‑2530983                                                                                                                                 |                                                                                                                                                                                                                                gatcagactcggttcgttgccgttgccgttgccgtggcttttgcttctaagtgcgcgatagttcaggcgacgcagattgcgacttcaggaggccgagcgtagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaag                                                                                                                                                        >  1:1046610‑M2/129‑202 (MQ=255)       actcggttcgttgccgtggccgtggccgtggcttttgcttctaagtgcgcgatagttcaggcgacgcagattgcgacttcaggaggccgagcgtagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaa                                                                                                                                       <  2:504945‑M2/91‑1 (MQ=255)                cgcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatc                                                                                                                             <  1:148855/214‑1 (MQ=31)                   tCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCACGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaag                                                                                                                                <  2:675069/208‑1 (MQ=11)                                                                    cTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGcac                                                   <  1:324240/236‑1 (MQ=255)                                                                           ccGGCAGGACCGCGCCGAAGGCCCCATCTTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATgg                                                       <  2:1021993/225‑1 (MQ=255)                                                                                 ggACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAg                                         <  2:729887/233‑1 (MQ=255)                                                                                  gACCGCGCCGAAGGCCCCAACCTGGCGCCTCAGCGCTTGACGGGCATCCATGCCCGACACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTta                                     <  1:198005/236‑1 (MQ=255)                                                                                   aCCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTg                                                            <  2:388276/212‑1 (MQ=255)                                                                                     tcaggaggccgagcgtagggcttgcggagggaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAAcagcag                                                               <  2:787090‑M2/163‑1 (MQ=255)                                                                                               gCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCAcag                         >  1:923428/1‑235 (MQ=255)                                                                                               gCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGAGGAGGGGCACAGAATCTCAGTTTACGACTGGCAcag                         >  1:153388/1‑235 (MQ=255)                                                                                                        tGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCagctgagct               <  1:1078181/236‑1 (MQ=255)                                                                                                             ccTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAGGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTg                                                            >  2:555595/1‑186 (MQ=255)                                                                                                               ccAGCGCTGGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGaa                                               <  1:263268/196‑1 (MQ=255)                                                                                                                cAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGt          <  2:594880/233‑1 (MQ=255)                                                                                                                aggcaggtgacgggcatCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCACGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGAT‑‑‑‑‑‑CAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACcg  >  1:640825‑M2/18‑235 (MQ=255)                                                                                                                  gcgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAgggg                                                            >  1:346483/1‑179 (MQ=255)                                                                                                                  gcgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTtactc                                  >  2:394420/1‑206 (MQ=255)                                                                                                                    aggtgacgggcaaCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGATCAGCCTCCTGACGTCGCGAAGATCAAGATCACGATCAAGATCAAGATCAAGCTCAAGGTCAAGATCAAGATcaacggcaa                                                                                                               >  2:916706‑M2/14‑128 (MQ=255)                                                                                                                                 |                                                                                                                                                                                                                                AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCACAGAATCTCAGTTTACTACTGGCACAGCAGCTGAGCTGGGGTGCCGACCG  >  AE015451/2530632‑2530983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.