New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2832682 =	74 (1.200)	7 (0.120)	7/324	NT	9.0%	intergenic (‑30/+37)	PP_2485/PP_2486	conserved protein of unknown function/NADH‑dependent flavin oxidoreductase, Oye family
	?	AE015451	2832710 =	71 (1.220)					intergenic (‑58/+9)	PP_2485/PP_2486	conserved protein of unknown function/NADH‑dependent flavin oxidoreductase, Oye family

AATCGCGTGATAAAAGCTGGCTGGGGCGACCTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2832895‑2832682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgtggcATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCTTGCCGCTGAAG  >  AE015451/2832710‑2832944                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATCGCGTGATAAAAGCTGGCTGGGGCGACCTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTT                                                                                                                                                                                                                                  >  2:530717/1‑225    CGCGTGAGAAAAGCTGGCTGGGGCGACCTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGG                                                                                                                                                                                                                                                    <  2:643571/204‑1                              CCTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCG                                                                                                                                                                                                                                                 >  2:907760/1‑181                               CTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTA                                                                                                                                                                                         <  1:530718/236‑1                                                    TTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCACTGCCACGCCCCATAACTCAGGGGCGTGGCc                                                                                                                                                                                                                                            >  2:80649/1‑163                                                                             CTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCG                                                                                                                                                                                                                   <  1:1001010/164‑1                                                                             CTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCG                                                                                                                                                                                                                   >  2:1001009/1‑164                                                                                                                                ACGGCGGTACCGAGAAGGGCTACCCCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGC                                                                                                                          <  1:32020/202‑1                                                                                                                                  GGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTT                                                                                                                                             <  1:723455/181‑1                                                                                                                                                                                       CAATGCCACGCCCCATAACTCAGGGGCGTCGCCTTGCGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGA                                                                                                                                                                    <  2:846697/105‑1                                                                                                                                                                                                             GGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCC                           <  2:529099/220‑1                                                                                                                                                                                                              GGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCT             <  1:647645/233‑1                                                                                                                                                                                                              GGGCGTGGCATTGAGCGTTTAGGATTGGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGTTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATT                                                   <  1:639579/195‑1                                                                                                                                                                                                               GGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACAGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCTTGC          >  1:625525/1‑235                                                                                                                                                                                                                 CGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCTTGC          >  2:752857/1‑233                                                                                                                                                                                                                 CGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATG                                                                                                                                                                             >  2:391883/1‑70                                                                                                                                                                                                                 CGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATG                                                                                                                                                                             <  1:391884/70‑1                                                                                                                                                                                                                    GGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGA                                                                                     >  2:837462/1‑155                                                                                                                                                                                                                      CATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCTTGCCGCTGAAG  >  1:766207/1‑236                                                                                                                                                                                                                      CATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGGTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCC                                                                           >  2:425051/1‑163                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATCGCGTGATAAAAGCTGGCTGGGGCGACCTGATCGCTTTTGGTCGCCCCTTCATTGCGAACCCCGACCTGCCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2832895‑2832682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgtggcATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTCGCCCCAGCCAGCTTTTATCACGCGATTTCCTCGTTCAGCGGTGTACTTGCCGGCATAGAGAATCTTGCCGCTGAAG  >  AE015451/2832710‑2832944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.