New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3136368 =	32 (0.520)	3 (0.050)	3/328	NT	7.9%	coding (1021/1335 nt)	PP_2752	conserved exported protein of unknown function
	?	AE015451	3136456 =	39 (0.660)					coding (1109/1335 nt)	PP_2752	conserved exported protein of unknown function

CGATCGCCTTGAGCCGCGCATCGTCAAGGTCGAGGTGCTCCAGGCCCCAGCGCCCTTCCTCGCCATTGAGCGGGCGTGCGCCGAAGTGCTTCTGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3136467‑3136368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcggcTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGCCGATCATGCCACCCTGCGCCCCCTGATCGACGCCAAGGCTGCCGAGTACGCGA  >  AE015451/3136456‑3136641                                                                                                                                                                                                                                                                                                CGATCGCCTTGAGCCGCGCATCGTCAAGGTCGAGGTGCTCCAGGCCCCAGCGCCCTTCCTCGCCATTGAGCGGGCGTGCGCCGAAGTGCTTCTGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAA                                                                                                                                                    <  2:501215/140‑1                    cTCGTCAAGGTCGAGGTGCTCCAGGCCCCAGCGCCCTTCCTCGCCATTGAGCGGGCGTGCGCCGAAGTGCTTCTGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGT                                                                                                                                            <  1:474543/128‑1                             GTCGAGGGGCTCCAGGCCCCAGCGCCCTTCCTCGCCATTGAGCGGGCGTGCGCCGAAGTGCTTCTGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAG                                                                                                            <  1:55961/152‑1                                                                                              GCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGCCGATCATGCCACCCTGCGCCCCCTGATCGACGCCAAGGCTGCCGAGTACGCGA  <  2:73418/193‑1                                                                                               CGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGCCGATCATGCCACCCTGCGCCCCCTGATCGACGCCAAGGCTGCCGAGTACGC    >  2:1058797/1‑190                                                                                                GCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGCCGATCATGCCACCCT                                        >  1:571207/1‑153                                                                                                 ctGCTCAAGGCGGTCGGTTTTCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCGGCGACCACGAGGGTGGCGGTGCCG                                                                                                                 <  2:531997/77‑1                                                                                                                                                                                                                                                                                                CGATCGCCTTGAGCCGCGCATCGTCAAGGTCGAGGTGCTCCAGGCCCCAGCGCCCTTCCTCGCCATTGAGCGGGCGTGCGCCGAAGTGCTTCTGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3136467‑3136368 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcggcTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGCCGATCATGCCACCCTGCGCCCCCTGATCGACGCCAAGGCTGCCGAGTACGCGA  >  AE015451/3136456‑3136641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.