New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3136368 =	32 (0.520)	3 (0.050)	3/328	NT	7.9%	coding (1021/1335 nt)	PP_2752	conserved exported protein of unknown function
	?	AE015451	3136456 =	39 (0.660)					coding (1109/1335 nt)	PP_2752	conserved exported protein of unknown function

AATGAAGACGTGCTGCCGGCCGGCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGC  >  AE015451/3136158‑3136588                                                                                                                                                                                                                   |                                                                                                                                                                                                                             aaTGAAGACGTGCTGCCGGCCGGCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCa                                                                                                                                                                                                       <  2:967696/234‑1 (MQ=255) aaTGAAGACGTGCTGCCGGCCGGCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCa                                                                                                                                                                                                       <  2:424873/234‑1 (MQ=255)                ccggccggCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCt                                                                                                                                                                                               <  2:505012/227‑1 (MQ=255)                ccggccggCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCt                                                                                                                                                                                               >  1:505013/1‑227 (MQ=255)                         tcgcgtactcggcagccttggcgtcgatcagggggcgcagggtggcatgatcggcctgcacccaatcggtaatcagcttccactgctggccatcccactgctgcaccttgacggcaccgccaccctcgtggtcgctgcacgacagcttcagcggctgcatcagccccaggaaaccgatcgccttgaGCCgcgc                                                                                                                                                                                                                        <  2:73418‑M1/7‑1 (MQ=255)                           gcgtactcggcagccttggcgtcgatcagggggcgcagggtggcatgatcggcctgcacccaatcggtaatcagcttccactgctggccatcccactgctgcaccttgacggcaccgccaccctcgtggtcgctgcacgacagcttcagcggctgcatcagccccaggaaaccgatcgccttgaGCcgcg                                                                                                                                                                                                                         >  2:1058797‑M1/185‑190 (MQ=255)                                gCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGc                                                                                                                                                                      >  1:394044/1‑236 (MQ=255)                                         aTCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGc                                                                                                                                                               <  2:670001/234‑1 (MQ=255)                                            tGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGACGGGCGCTGGGGCCTg                                                                                                                                                                   >  2:424362/1‑227 (MQ=255)                                                       cccTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACg                                                                                                                                                >  1:961000/1‑235 (MQ=255)                                                               agggtggcatgatcggcctgcacccaatcggtaatcagcttccactgctggccatcccactgctgcaccttgacggcaccgccaccctcgtggtcgctgcacgacagcttcagcggctgcatcagccccaggaaaccgatcgccttgaGCcgc                                                                                                                                                                                                                          >  1:571207‑M1/149‑153 (MQ=255)                                                                         gACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCg                                                                                                                                                                                                 >  2:311169/1‑168 (MQ=255)                                                                                  aTCCACCAGCGCATCAAGGAACACCTCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCa                                                                                                                                                                                             <  2:245990/163‑1 (MQ=255)                                                                                  aTCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGc                                                                                                                                >  2:189783/1‑224 (MQ=255)                                                                                  aTCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCg                                                                                                                               >  2:584687/1‑225 (MQ=255)                                                                                     caccaGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGc                                                                                                                                                               <  2:1009567/190‑1 (MQ=255)                                                                                              aTCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCa                                                                                                        >  1:322938/1‑236 (MQ=255)                                                                                                           tCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCt                                                                                                              >  1:808987/1‑217 (MQ=255)                                                                                                             cTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCt                                                                                                  >  1:269049/1‑227 (MQ=255)                                                                                                                      ggCAAGAGCGACCTCAAGGATCCGCAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTg                                                                                                                                                                   <  2:412100/153‑1 (MQ=255)                                                                                                                         aaGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGAGCGGTTTCCTGGGGCTGATGCAGCCGCTGGAGCCGt                                                                                          >  2:808564/1‑223 (MQ=255)                                                                                                                                   cttgacggcaccgccaccctcgtggtcgctgcacgacagcttcagcggctgcatcagccccaggaaaccgatcgccttgaGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCCCCTCGAc                                                                                                                                                       <  1:55961‑M1/72‑1 (MQ=255)                                                                                                                                     aaGGATCCGACGAGCTTCGGCAGCGTCTACTACAACGCCGGCCGGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTg                                                                                                                                                   <  2:375412/154‑1 (MQ=255)                                                                                                                                        cggcaccgccaccctcgtggtcgccgcacgacagcttcagcggctgcatcagccccagaaaaccgaccgccttgagcag                                                                                                                                                                                                                           <  2:531997‑M1/4‑3 (MQ=255)                                                                                                                                              aaGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCGCGAGGGTGGCGGGGcc                                                             >  1:269046/1‑231 (MQ=255)                                                                                                                                                               ctactaCAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCTGCGACCACTAGGGTGGc                                                                   >  1:293489/1‑208 (MQ=255)                                                                                                                                                                   acgacagcttcagcggctgcatcagccccaggaaaccgatcgccttgaGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACgag                                                                                                                                              <  1:474543‑M1/81‑2 (MQ=255)                                                                                                                                                                        cTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGa                                                                                                            <  2:270809/158‑1 (MQ=255)                                                                                                                                                                           ttcagcggctgcatcagccccaggaaaccgatcgccttgaGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCg                                                                                                                           <  2:501215‑M1/100‑1 (MQ=255)                                                                                                                                                                           cGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGc                                                                                                                                                                                        >  2:91482/1‑79 (MQ=255)                                                                                                                                                                               cTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCt                       <  1:189783/236‑1 (MQ=255)                                                                                                                                                                                     aaTGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTAc                 >  1:860625/1‑236 (MQ=255)                                                                                                                                                                                         ccgccATCGCCGTCGCGGCGATCCGCGCCGCGCCGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTg                                                                                                 <  2:1046701/152‑1 (MQ=255)                                                                                                                                                                                         ccgccATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTAcc                <  2:960999/233‑1 (MQ=255)                                                                                                                                                                                          cgccATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCTCGTCGGCGCACGCCCGCGCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGc                                     <  1:368564/211‑1 (MQ=255)                                                                                                                                                                                             cagcGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCCCTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCg                                                            <  2:350592/182‑1 (MQ=255)                                                                                                                                                                                             cATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGAt                    >  2:664633/1‑225 (MQ=255)                                                                                                                                                                                             cATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGAt                    <  1:664634/225‑1 (MQ=255)                                                                                                                                                                                                        aGGCGAGCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAg                                                       <  1:145510/179‑1 (MQ=255)                                                                                                                                                                                                                cgcgccgcgcAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGc  >  2:532775/1‑224 (MQ=255)                                                                                                                                                                                                                cgcgccgcgcAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGc  <  1:532776/224‑1 (MQ=255)                                                                                                                                                                                                                 gcgccgcgcAGTAGCCCTTCGGCGCACGCCCGCTCAATGGCGAGCAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGt                                                                                       <  2:953412/138‑1 (MQ=255)                                                                                                                                                                                                                   |                                                                                                                                                                                                                             AATGAAGACGTGCTGCCGGCCGGCGAGGCGGGCAAGGGTTATCTGGCCCTGACGCCCTATCCGGGCGGTGCCGACTTCGACATCCACCAGCGCATCAAGGAACACATCCTCGACAAGGGCAAGAGCGACCTCAAGGATCCGAAGAGCTTCGGCAGCGTCTACTACAACTCCGGCCTGGTGAATGCCGCCATCGCCGTCGAGGCGATCCGCGCCGCGCAGAAGCACTTCGGCGCACGCCCGCTCAATGGCGAGGAAGGGCGCTGGGGCCTGGAGCACCTCGACCTTGACGATGCGCGGCTCAAGGCGATCGGTTTCCTGGGGCTGATGCAGCCGCTGAAGCTGTCGTGCAGCGACCACGAGGGTGGCGGTGCCGTCAAGGTGCAGCAGTGGGATGGCCAGCAGTGGAAGCTGATTACCGATTGGGTGCAGGC  >  AE015451/3136158‑3136588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.