New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3237184	38 (0.610)	4 (0.070)	4/330	NT	9.5%	coding (678/1035 nt)	PP_2835	putative oxidoreductase
	?	AE015451	= 3237241	40 (0.670)					coding (735/1035 nt)	PP_2835	putative oxidoreductase

ACCCTCGGCCTGGTCGGCCAATGCCGCGATGCCGGCCGGCGTCTGCCGCACCCTGTGCTGGTGAGCAATGACGGGCAGCTCAGCGATGACCCGGGCGATTTCTTTACCCGCCCGCAAGGCAGCATCCTGCCGCTCGGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3237041‑3237184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGATGCTGCCTTGCGGGCGGGTAAAGAAATCGCCCGGGTCATCGCTGAGCTGCCCGTCATTGCTCACCAGCACAGGGTGCGGCAGACGCCGGCCGGCATCGCGGCATTGGCCGACCAGGCCGAGGGTGACGGTGGACATGCTGACATCCAGCAGGATCGG  <  AE015451/3237241‑3237008                                                                                                                                                                                                                                                                                                                                                                                            ACCCTCGGCCTGGTCGGCCAATGCCGCGATGCCGGCCGGCGTCTGCCGCACCCTGTGCTGGTGAGCAATGACGGGCAGCTCAGCGATGACCCGGGCGATTTCTTTACCCGCCCGCAAGGCAGCATCCTGCCGCTCGGC                                                                                                                                                                                                                                                  <  2:682291/138‑1          CTGGTCGGCCAATGCCGCGAGGCCGGCCGGCGTCTGCCGCACCCTGTGCTGGTGAGCAATGACGGGCAGCTCAGCGAGGCCCCGGGCGATTTCTTTCCCCGCCCGCAAGGCAGCATCCTGCCGCTCGGCG                                                                                                                                                                                                                                                 <  2:133106/130‑1                                                                     TGACGGGCAGCTCAGCGATGACCCGGGCGATTTCTTTACCCGCCCGCAAGGCAGCATCCTGCCGCTCGGCGGCCAGCCCCGAGGCGAGGGCTTCGACCAACAGCGCAAGGGCAAAA                                                                                                                                                                                                    >  2:493550/1‑116                                                                                            CGGGCGATTTCTTTACCCGCCCGCAAGGCAGCATCCTGCCGCTCGGCGGCCAGCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTCGTGGCCAAAGGCCTGGCCGCCGAGCGGGAGGATGCTGCCTTGCGGGC                                                                                                                                                >  2:684427/1‑145                                                                                                                   CAAGGCAGCATCCTGCCGCTGGGCGGCCAGCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGC                                                                                                                                                                   >  2:708409/1‑103                                                                                                                    AAGGCAGCATCCTGCCGCTCGGCGGCCAGCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGg                                                                                                                                                               >  2:299102/1‑105                                                                                                                                          CGGCCAGCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGATGCTGCCTTGCGGGCGGGTAAAGAAATCGCCCGGGTCATCGCTGAGCTGCCCGTCATTGCTCACCAGCACAGGGTGCGGCAGACGCCGGCCGGCATC                                                              >  1:500435/1‑181                                                                                                                                            GCCAGCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGATGCTGCCTTGCGGGCGGGTAAAGAAATCGCCCGGGTCATCGCTGAGCTGCCCGTCATTGCTCACCAGCACAGGGTGCGGCAGACGCCGGCCGGCATCGCGGCATTGGCCGACCAGGCCGAGGGTGACGGTGGACATGCTGACATCCAGCA         <  1:1122052/232‑1                                                                                                                                                GCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGATGCTGCCTTGCGGGCGGGTAAAGAAATCGCCCGGGTCATCGCTGAGCTGCCCGTCATTGCTCACCAGCACAGGGTGCGGCAGACGCCGGCCGGCATCGCGGCATTGGCCGACCAGGCCGAGGGTGACGGTGGACATGCTGACATCCAGCAGGATCGG  >  1:441283/1‑235                                                                                                                                                                                                                                                                                                                                                                                            ACCCTCGGCCTGGTCGGCCAATGCCGCGATGCCGGCCGGCGTCTGCCGCACCCTGTGCTGGTGAGCAATGACGGGCAGCTCAGCGATGACCCGGGCGATTTCTTTACCCGCCCGCAAGGCAGCATCCTGCCGCTCGGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3237041‑3237184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagCCCCGAGGTGAGGGCTTCGACCAACAGCGCAAGGGCAAAACCTTTGTGGCCAAAGGCCTGGCCGCCGAGCGGCAGGATGCTGCCTTGCGGGCGGGTAAAGAAATCGCCCGGGTCATCGCTGAGCTGCCCGTCATTGCTCACCAGCACAGGGTGCGGCAGACGCCGGCCGGCATCGCGGCATTGGCCGACCAGGCCGAGGGTGACGGTGGACATGCTGACATCCAGCAGGATCGG  <  AE015451/3237241‑3237008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.