New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3622662 =	57 (0.920)	5 (0.090)	4/326	NT	7.9%	coding (60/459 nt)	PP_3193	conserved protein of unknown function
	?	AE015451	3622748 =	63 (1.070)					coding (1305/1344 nt)	PP_3194	conserved protein of unknown function

CGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3622904‑3622662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtcgcgGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCC  >  AE015451/3622748‑3622978                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGC                                                                                                                                                                                                                                                >  1:688476/1‑236      GTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGT                                                                                                                                                                                                                                             >  2:501888/1‑234                             ATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCGGGTGTAGAGGTCGGTCCATT                                                                                                                                                                                                                     <  1:670340/235‑1                                CTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGG                                                                                                                                                                                                                                              <  1:33132/207‑1                                             CTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGTGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTC                                                                                                                                                                                                                                            <  1:845419/196‑1                                              TCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCCACTTCGAACTGGCAGTGCAACTGGCGG                                                                                                                                                                                                                                              >  2:455838/1‑193                                              TCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGAGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTC                                                                                                                                                                                                                                            >  2:614744/1‑195                                                                         CGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGG                                                                                                                                                                                                                                              >  1:425334/1‑166                                                                         CGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGG                                                                                                                                                                                                                                              <  2:425333/166‑1                                                                                             gaACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACGCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGC                                                                                                                                                                                           <  1:47113/195‑1                                                                                             GCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCG                                                                                                                                                                                                                                           >  2:712797/1‑149                                                                                                                GCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGA                                                                                                                                                                                                  <  2:704275/171‑1                                                                                                                                                      TCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCG                                                                                                                                                         >  2:938743/1‑174                                                                                                                                                             CCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCACCGAATTGAAGTCCGACACCGGC                                                                                                                                                                                           <  2:1047290/133‑1                                                                                                                                                                                                                                               gCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGGCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCC  <  1:373873/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTACAACCCCAAGCAGGTGTCGGACTTCAATTCGCTGAAATGGACCGACCTCTACACCCGCGACCGCGTGTCCGAACTCGGCAAATGGAGGCTGTGAGCATGACAACGCTCAACTTCGAACTGGCAGTGCAACTGGCGGTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3622904‑3622662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtcgcgGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCC  >  AE015451/3622748‑3622978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.