New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3662077 =	56 (0.910)	3 (0.050)	3/324	NT	5.1%	coding (757/1143 nt)	PP_3226	Acyl‑CoA dehydrogenase‑related protein
	?	AE015451	3662181 =	58 (1.000)					coding (653/1143 nt)	PP_3226	Acyl‑CoA dehydrogenase‑related protein

AACGACCCGTTGGTCGGCGGCTTCCTTGTGCACTGCGACACGCCTGGCATCACGATCATCGATGACTGGGACCACTTGGGCATGCGCGCCACTTGCAGCCACGAAGTGCGCTTCGACGATGTGCTGATTCCCCTCGACCACGCCGTCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGACGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3662317‑3662077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggcgtggTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTCGTTGTCGTCGCTGCGGCCCCACACCAGGTACCAGGTCAGGCCGTGGCTGCCGGTGGAGTAGATCTTTCGCCCGCTCAAGCGCCAGCCTTCGGCCGTGCG  >  AE015451/3662181‑3662413                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            acCGACCCGTTGGTCGGCGGCTTCCTTGTGCACTGCGACACGCCTGGCATCACGATCATCGATGACTGGGACCACTTGGGCATGCGCGCCACTTGCAGCCACGAAGTGCGCTTCGACGATGTGCTGATTCCCCTCGACCACGCCGTCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGAC                                                                                                                                                                                                                                                  <  1:658092/232‑1                                           CCTGGCATCACGATCATCGATGACTGGGACCACTTGGGCATGCGCGCCACTTGCAGCCACGAAGTGCGCTTCGACGATGTGCTGATTCCCCTCGACCACGCCGTCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGACGGCGTGGTC                                                                                                                                                                                                                                         <  2:745457/201‑1                                                                                                              GCTTCGTCGATGTGCTGATTCCCCTCGCCCACGCCGCCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGAC                                                                                                                                                                                                                                                  <  2:496499/125‑1                                                                                                                                            ACGCCGTCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGACGGCGTGGTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTC                                                                                                     >  1:303430/1‑236                                                                                                                                                        TCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGGCGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGACGGCGTGGTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGC                                                                                                                                                                                         <  1:836946/140‑1                                                                                                                                                                                                                 CGGTGTTACTGCCGGCCGTATACGACGGCGTGGTCGAGGGGAATCAGCACATCG                                                                                                                                                                                                                      <  2:845619/54‑1                                                                                                                                                                                                                                        GACGGCGTGGTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTCGTTGT                                                                                                <  2:544819/149‑1                                                                                                                                                                                                                                                GGTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTCGTTGTCGTCGCTGCGGCCCTACACCAGGTACCAGGTCAGGCCGTGGCTGCCGGTGGAGTAGATCTTTCGCCCGCTCAAG                      <  2:888460/215‑1                                                                                                                                                                                                                                                GGTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTCGTTGTCGTCGCTGCGGCCCCACACCAGGTACCAGGTCAGGCCGTGGCTGCCGGTGGAGTAGATCTTTCGCCCGCTCAAGCGCCAGCCTTCGGCCGTGCG  >  2:517446/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACGACCCGTTGGTCGGCGGCTTCCTTGTGCACTGCGACACGCCTGGCATCACGATCATCGATGACTGGGACCACTTGGGCATGCGCGCCACTTGCAGCCACGAAGTGCGCTTCGACGATGTGCTGATTCCCCTCGACCACGCCGTCAGCGTCAGCCCCGCCAGTGCCCCGCAGGCCGAACTAGACGGCGAGAGCCTACTGTGGATGGCGGTGTTACTGCCGGCCGTATACGACGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3662317‑3662077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggcgtggTCGAGGGGAATCAGCACATCGTCGAAGCGCACTTCGTGGCTGCAAGTGGCGCGCATGCCCAAGTGGTCCCAGTCATCGATGATCGTGATGCCAGGCGTGTCGCAGTGCACAAGGAAGCCGCCGACCAACGGGTCGTTGTCGTCGCTGCGGCCCCACACCAGGTACCAGGTCAGGCCGTGGCTGCCGGTGGAGTAGATCTTTCGCCCGCTCAAGCGCCAGCCTTCGGCCGTGCG  >  AE015451/3662181‑3662413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.