New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4571500	54 (0.870)	5 (0.080)	5/332	NT	8.5%	coding (1364/2775 nt)	treY	maltooligosyl trehalose synthase
	?	AE015451	= 4571540	56 (0.940)					coding (1404/2775 nt)	treY	maltooligosyl trehalose synthase

ACCAGGTGTCGCTGCTGCAGCATGATCCGGCCGGCGAAGCGCCGCTGAGCGAACTGTGGAGCAACGTCAGCGAGCGCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4571263‑4571500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAGGGTCAGGTCACGGGTCATCAGGTCGTTGCGCGCCACCTGCAACAGTGCCTGGGCCACCGACTCGCAGTCACCGGCCAGGCTGGCGTTGAGCACCAGGTGACGGGCCTGGCGCACTTCTTCAGGGAAGTCCGGGCGCTCGCTGACGTTGCTCCAC  <  AE015451/4571540‑4571318                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCAGGTGTCGCTGCTGCAGCATGATCCGGCCGGCGAAGCGCCGCTGAGCGAACTGTGGAGCAACGTCAGCGAGCGCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAG                                                                                                                                                                                                                                   >  1:242708/1‑236         TCGCTGCTGCAGCATGATCCGGCCGGCGAAGCGCCGCTGAGCGAACTGTGGAGCAACGTCAGCGAGCGCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAGG                                                                                                                                                                                                                                  <  2:986561/229‑1                                                                                                                 CCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCA                                                                                                                                                                                                                                    >  2:909728/1‑123                                                                                                                                   CCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGC                                                                                                                                                                                       <  1:1094176/150‑1                                                                                                                                   CCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGC                                                                                                                                                                                       >  2:1094175/1‑150                                                                                                                                              accGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGCCCTGATGACCCGTGACCTGCCCCTGGGCGCGATGCGCAGGGC‑CTTGCAGGCATTGAAGTAGGTTCGGTAAGCCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAG                                                                                                                                                            <  1:782284/163‑1                                                                                                                                                         GTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGCC‑CTTGCAGG                                                                                                                                                                                                                                  <  2:654479/85‑1                                                                                                                                                                                                          ACCTGACCCTGGGCGCGATTCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAGGGTCAGGTCGCGGGGCA                                                                                                                                           >  2:1134589/1‑124                                                                                                                                                                                                           CCTGACCCTGGGCGCGATTCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAGGGTCAGGTCACGGGTCATCAGGTCGTTGCGCGCCACCTGCAACAGTGCCTGGGCCACCGACTCGCAGTCACCGGCCAGGCTGGCGTTGAGCACCAGGTGACGGGCCCGGCGCCCTTCTTCCGGG                                >  1:257370/1‑230                                                                                                                                                                                                                                            AGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAGGGTCAGGTCACGGGTCATCAGGTCGTTGCGCGCCACCTGCAACAGTGCCTGGGCCACCGACTCGCAGTCACCGGCCAGGCTGGCGTTGAGCACCAGGTGACGGGCCTGGCGCACTTCTTCAGGGAAGTCCGGGCGCTCGCTGACGTTGCTCCAC  <  1:100480/227‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCAGGTGTCGCTGCTGCAGCATGATCCGGCCGGCGAAGCGCCGCTGAGCGAACTGTGGAGCAACGTCAGCGAGCGCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGC‑CTTGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4571263‑4571500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGAATCGCGCCCAGGGTCAGGTCACGGGTCATCAGGTCGTTGCGCGCCACCTGCAACAGTGCCTGGGCCACCGACTCGCAGTCACCGGCCAGGCTGGCGTTGAGCACCAGGTGACGGGCCTGGCGCACTTCTTCAGGGAAGTCCGGGCGCTCGCTGACGTTGCTCCAC  <  AE015451/4571540‑4571318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.