New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 4703829 | 47 (0.760) | 5 (0.080) | 5/330 | NT | 9.8% | coding (1335/1695 nt) | kdpA | potassium‑transporting ATPase A chain |
? | AE015451 | = 4703830 | 47 (0.790) | coding (1334/1695 nt) | kdpA | potassium‑transporting ATPase A chain |
TAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4703665‑4703829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggccCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCG < AE015451/4703830‑4703615 TAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGGACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAGCCATGCGCCCCCGGGGTGGTGACCGCCCCGGCCCGGCCGGGc > 2:270131/1‑173 CGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCgc > 1:491303/1‑94 AGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGCGTACCACCACCCGATGCTCGGC > 1:692839/1‑185 GGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGC > 2:717021/1‑129 GAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCCCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGGTTG > 1:115646/1‑139 CCCCCGGGTTGGTGACCGCCCCGGCC < 2:913181/26‑1 ACCGCCCCGGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCCGA > 2:966728/1‑141 GGCCCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCG > 1:590220/1‑220 TAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4703665‑4703829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggccCGGCCGGGGCGGTCACCAACCCGGGGGCGCATGGTTTCAGCCAGTTGCTGTACGCCTATACCTCGGGCTCGGCCAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCG < AE015451/4703830‑4703615 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |