New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4703829	47 (0.760)	5 (0.080)	5/330	NT	9.8%	coding (1335/1695 nt)	kdpA	potassium‑transporting ATPase A chain
	?	AE015451	= 4703830	47 (0.790)					coding (1334/1695 nt)	kdpA	potassium‑transporting ATPase A chain

CGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGTTGAC  >  AE015451/4703615‑4704062                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          cgcTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGggcc                                                                                                                                                                                                                                      >  1:590220‑M2/1‑216 (MQ=255)                        ccGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGc                                                                                                                                                                                                <  1:629644/235‑1 (MQ=255)                                                aTGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATgg                                                                                                                                                                                                                  <  2:530013/193‑1 (MQ=255)                                                   tAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGGACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAGCCATGCGCCCCCGGGGTGGTGACCGC‑‑‑‑‑CCCGGCCcggccgggc                                                                                                                                                                                                                                  >  2:270131‑M1/1‑165 (MQ=255)                                                             ggCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTggcggc                                                                                                                                                                                                                       <  2:862677/175‑1 (MQ=255)                                                             ggCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTg                                                                                                                                                           >  1:860779/1‑235 (MQ=255)                                                             ggCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTg                                                                                                                                                           >  1:731993/1‑235 (MQ=255)                                                                          ggCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCt                                                                                                                                             >  1:580737/1‑236 (MQ=255)                                                                                gCCGAGCATCGGGTGGTGGTACGCGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGggccggggcggtcaccaacccgggggcgcatggtttcagccagttgct                                                                                                                                                                                          >  1:692839‑M2/1‑137 (MQ=255)                                                                                   gATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCCGGGTTGCCACCAGAAg                                                                                                                                                              >  2:628912/1‑210 (MQ=255)                                                                                    atcatcAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACTGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGgcgc                                                                                                                                                                                                               >  2:607410/1‑160 (MQ=255)                                                                                       atcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGTCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGgcgc                                                                                                                                                                                                               >  1:284756/1‑157 (MQ=255)                                                                                       atcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGcc                                                                                                                                >  1:270759/1‑236 (MQ=255)                                                                                       atcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTCGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTg                                                                                                                                                                                                                            >  2:149183/1‑144 (MQ=255)                                                                                        tcgGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGggccggggcggt                                                                                                                                                                                                                              >  2:966728‑M2/1‑129 (MQ=255)                                                                                            gTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGccac                                                                                                                                                                    <  2:506250/195‑1 (MQ=255)                                                                                               gtgGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCAcgt                                                                                                                                                      >  1:505541/1‑204 (MQ=255)                                                                                                      acGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCt                                                                                                                                                            <  2:1027471/193‑1 (MQ=255)                                                                                                      acGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGcc                                                                                                                                              >  1:42723/1‑207 (MQ=255)                                                                                                         gtgtTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTAc                                                                                                               <  1:1014795/235‑1 (MQ=255)                                                                                                             tGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGc                                                                                                                                                             >  1:483459/1‑185 (MQ=255)                                                                                                             tGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACg                                                                                                              <  2:580736/232‑1 (MQ=255)                                                                                                             tGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTCCTTGCCCAGGTATTCCGGGGTACGGCCa                                                                                                          >  1:583436/1‑236 (MQ=255)                                                                                                                cgcCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGACGCTg                                                                                                                                                           >  1:406327/1‑184 (MQ=255)                                                                                                                 gcCAAACCCGGCAAAGGCGGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATg                                                                                                                                                                                                                   <  1:296818/127‑1 (MQ=255)                                                                                                                   cAACCCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGGGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGggccggggcggtcaccaacccgggggcgcatggtttc                                                                                                                                                                                                     >  1:115646‑M2/1‑102 (MQ=255)                                                                                                                       cccGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGcc                                                                                                >  1:903029/1‑236 (MQ=255)                                                                                                                       cccGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGCCGCCa                                                                                                                                                                                                             >  2:204912/1‑127 (MQ=255)                                                                                                                              aaGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGcc                                                                                                                                              <  2:754228/183‑1 (MQ=255)                                                                                                                                 gCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGggccggggcggtcaccaacccgggggcgcatggtttcagcc                                                                                                                                                                                                 >  2:717021‑M2/1‑88 (MQ=255)                                                                                                                                 gCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGaa                                                                                      <  1:900643/236‑1 (MQ=255)                                                                                                                                    gAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAGCCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTg                                                                                                                                                                        <  2:1043506/151‑1 (MQ=255)                                                                                                                                        cGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCcggccggggcggtcgc                                                                                                                                                                                                                           >  1:491303‑M1/1‑80 (MQ=255)                                                                                                                                               ggCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACcgcg                                                                               >  2:718104/1‑229 (MQ=255)                                                                                                                                                       ccGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCCCGCCAACCGGCATCACCAGCAGGGTTGCCACCAg                                                                                                                                                                 >  2:449326/1‑139 (MQ=255)                                                                                                                                                       ccGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcag                                                                 >  1:435106/1‑235 (MQ=255)                                                                                                                                                       ccGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACAAcgcg                                                                               >  1:473858/1‑221 (MQ=255)                                                                                                                                                                   cGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCCGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGGATTCCGGGGTACGGCCACTCATCAGCCCGGCCa                                                                                          >  2:333354/1‑198 (MQ=255)                                                                                                                                                                   cGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGaa                                                                                      >  1:392182/1‑202 (MQ=255)                                                                                                                                                                        aGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTa                                                     >  1:886820/1‑235 (MQ=255)                                                                                                                                                                        aGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCcggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggcctttgccgggtttggcgccaacaccgcgtaccaccacccgatgctcggc                                                                                                  >  1:692839‑M1/1‑48 (MQ=255)                                                                                                                                                                        aGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACgg                                                                                                             >  2:1001505/1‑174 (MQ=255)                                                                                                                                                                          cAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCGGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcagcag                                                              >  1:14251/1‑219 (MQ=255)                                                                                                                                                                           aaCTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCgg                                                                                                                    <  1:199236/164‑1 (MQ=255)                                                                                                                                                                               ggCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCcggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggc                                                                                                                                                   >  2:717021‑M1/1‑41 (MQ=255)                                                                                                                                                                                   gAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCcggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctataccccgggctcggccaacaacggctcggcctttgccggggttg                                                                                                                                     >  1:115646‑M1/1‑37 (MQ=255)                                                                                                                                                                                        cATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCAc                                                                                                                                                   <  1:536237/120‑1 (MQ=255)                                                                                                                                                                                            cgcCCCCGGGTTGGTGACCGCCCCGGCCCGGCCGGGGCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcagca                                                               <  2:886819/205‑1 (MQ=255)                                                                                                                                                                                             gcCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCATCCGGCATCAGCAGCAGGGATGCCACCAGAAGCTGCACTTCACGGCCCTGCAGCTTCTTGcc                                                                                                                                >  1:685671/1‑134 (MQ=255)                                                                                                                                                                                              cccccGGGTTGGTGACCGC‑‑‑‑‑CCCGGCC                                                                                                                                                                                                                                           <  2:913181‑M1/26‑1 (MQ=255)                                                                                                                                                                                               ccccGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcagca                                                               <  2:568144/197‑1 (MQ=255)                                                                                                                                                                                                     gTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAc                                                                   >  2:590781/1‑187 (MQ=255)                                                                                                                                                                                                      ttGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcagca                                                               <  2:371896/190‑1 (MQ=255)                                                                                                                                                                                                         gcgacCGC‑‑‑‑‑CCCGGCCGggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacg                                                                                                                                                          >  1:491303‑M2/3‑16 (MQ=255)                                                                                                                                                                                                            aCCGC‑‑‑‑‑CCCGGCCcggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggcctttgccgggtttggcgccaacaccgtgtaccacaacccga                                                                                                          >  2:966728‑M1/1‑12 (MQ=255)                                                                                                                                                                                                              ccc‑‑‑‑‑cccGGCCGGGCCGGGCAGGCGGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAAcagca                                                               <  2:249247/180‑1 (MQ=255)                                                                                                                                                                                                                     gcccgGCCGggccggggcggtcaccaccccgggggcgcatggcttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggcctttgccgggtttggcgccaacaccgtgtcccacaacctgatgatcggcctggccatgctcatcggccgcttcggcta                                                                     >  2:270131‑M2/2‑9 (MQ=255)                                                                                                                                                                                                                      cccGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGt      <  1:585596/236‑1 (MQ=255)                                                                                                                                                                                                                      cccGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGGACGGc                                                                                                            >  2:189701/1‑134 (MQ=255)                                                                                                                                                                                                                      cccGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGAATCACCAGCAGGGTTGCCACCAGAAGCTGCCCTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCg                                        <  1:260093/202‑1 (MQ=255)                                                                                                                                                                                                                       ccggccggGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGtt     <  1:982128/236‑1 (MQ=255)                                                                                                                                                                                                                         ggcccggccggggcggtcaccaacccgggggcgcatggtttcagccagttgctgtacgcctatacctcgggctcggccaacaacggctcggcctttgccgggtttggcgccaacaccgtgtaccacaacctgatgatcggcctggccatgctcatcggccgcttcggctacatcctgccgatactggcgttggccggcagcctggcggcgaaaaaaagcg                   >  1:590220‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                          gccgggccggGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGTTGAc  <  1:650402/236‑1 (MQ=255)                                                                                                                                                                                                                          gccgggccggGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGTTGAc  <  1:1054574/236‑1 (MQ=255)                                                                                                                                                                                                                           ccgggccgggCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGTTGAc  <  1:889252/235‑1 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                                          CGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGC‑‑‑‑‑CCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCCGGCCAGGAACACCGCGATAAGGACGAACAGCAGCATGCCGTAGAGGCCCGCGCCGACGCCGCCGAATATCACCTCGCCGACCATCATGTTGAC  >  AE015451/4703615‑4704062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.