| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 5020424 = | 92 (1.490) | 5 (0.080) | 5/328 | NT | 5.7% | coding (111/468 nt) | PP_4424 | Uncharacterized HTH‑type transcriptional regulator y4tD |
| ? | AE015451 | 5020446 = | 79 (1.340) | coding (133/468 nt) | PP_4424 | Uncharacterized HTH‑type transcriptional regulator y4tD | |||||
AGTCCTCCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5020665‑5020424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcgcAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGATATGGAGGACTACGAGAACTTCACCC > AE015451/5020446‑5020680 AGTCCTCCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGC > 1:137602/1‑236AGTCCTCCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAG > 2:928865/1‑235 CCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGTAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGC > 1:56062/1‑236 CCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGC > 1:486776/1‑236 ATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGCTGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGC > 1:49331/1‑182 CATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGCAGTGAAGGGGTCATCGAGAGC > 1:908801/1‑196 CATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGCAGTGAAGGGGTCATCGAGAGC < 2:908800/196‑1 AGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGCAGTG < 2:13270/97‑1 ACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGGTGGAAGGCATGTCACCATGCTGGGGCTGGTCACTTTGGAACGAGAGCGCTCCGACATTATCGATAAGTTC > 1:160393/1‑204 CCGCTTTATGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTAACTGCGCAGGCGCTTAAGCCTGCGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACG < 1:844335/163‑1 agtGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGT < 1:44656/135‑1 GCCTGCGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTC > 2:709001/1‑200 TGCGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACC < 2:1125743/206‑1 GCGTAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGATATGGAGGACTACGAGAACTTCA < 1:321369/236‑1 CGCAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGATATGGAGGACTACGAGAACTTCAC > 1:459555/1‑236 GCATTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTTGTGCTGGTCACTTTGGAACGAGAGAGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACC < 2:406453/203‑1 CAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGCTATGGAGGACTACGAGAACTTCAC > 1:905792/1‑234 CAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGATATGGAGGACTACGAGAACTTCACCC > 1:1056237/1‑236 AGTCCTCCATATCCTTTGAGGTTACGAGGAGTACAAAGTCAGCATCACCCGTGACATAGGATCCGCTCATGACCTCAGGAGTATTTTTAATGGCCTGCTTGAACTTATCGATAATGTCTGAGCGCTCTCGTTCCAAAGTGACCAGCACCAGCATGGTGACATGCCTTCCAACCGCTTTAGGGTTGATGATGGAGATGTCGCTCTCGATGACCCCTTCACTGCGCAGGCGCTTAAGCCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5020665‑5020424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcgcAGTGAAGGGGTCATCGAGAGCGACATCTCCATCATCAACCCTAAAGCGGTTGGAAGGCATGTCACCATGCTGGTGCTGGTCACTTTGGAACGAGAGCGCTCAGACATTATCGATAAGTTCAAGCAGGCCATTAAAAATACTCCTGAGGTCATGAGCGGATCCTATGTCACGGGTGATGCTGACTTTGTACTCCTCGTAACCTCAAAGGATATGGAGGACTACGAGAACTTCACCC > AE015451/5020446‑5020680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |