New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5363484	71 (1.150)	5 (0.080)	5/328	NT	7.8%	coding (282/1341 nt)	glmM	Phosphoglucosamine mutase
	?	AE015451	= 5363528	51 (0.860)					coding (238/1341 nt)	glmM	Phosphoglucosamine mutase

GCCTTCGAAGCTGGTGCTGCTCGGCACACTGCTCTTGCAGAATTCGATGTAGCGGCCGGCGGCATCGTTGATACGCGAAACCTTGCCCAGCTTGCCCGACTCGACAACGGTCATCGGTTGGTCGAGCAGCTCTTCGATCATCAGCTCGACCTCGTCCGGCAGCTTGGTGCCCTGGCCCGAGAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5363247‑5363484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgccgACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGGGCAAGGTTTCGCGTATCAACGATGCCGCCGGCCGCT  <  AE015451/5363528‑5363297                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCTTCGAAGCTGGTGCTGCTCGGCACACTGCTCTTGCAGAATTCGATGTAGCGGCCGGCGGCATCGTTGATACGCGAAACCTTGCCCAGCTTGCCCGACTCGACAACGGTCATCGGTTGGTCGAGCAGCTCTTCGATCATCAGCTCGACCTCGTCCGGCAGCTTGGTGCCCTGGCCCGAGAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGC                                                                                                                                                                                                                                            >  1:460787/1‑236  CCTTCGAAGCTGGTGCTGCTCGGCACACTGCTCTTGCAGAATTCGATGTAGCGGCCGGCGGCATCGTTGATACGCGAAACCTTGCCCAGCTTGCCCGACTCGACAACGGTCATCGGTTGGTCGAGCAGCTCTTCGATCATCAGCTCGACCTCGTCCGGCAGCTTGGTGCCCTGGCCCGAGAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCC                                                                                                                                                                                                                                           >  1:500183/1‑236                                                                                                                                                                      GGTGCCCTGGCCCGAGAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGCTGACGATGCCGACACCGGCCATCGCGTAC                                                                                                                                                                                                                        >  2:42544/1‑91                                                                                                                                                                                     GAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCCGACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGGGCCTCGCCCAACCCGCACGATGACACCGGCATCAAGTTCTTCTC                                                                                                                                  >  1:88597/1‑162                                                                                                                                                                                                  CCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCCGACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCCGCCGGACG                                                                                                        >  1:796124/1‑175                                                                                                                                                                                                        TCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCCGACACCGGCCATCGCTTACCCCACGCGTACCTTCCACGCCGCAGCCGGCATCGTCATCAGTGCCTCG                                                                                                                                                                        >  1:942337/1‑105                                                                                                                                                                                                                                CTGATGACGATGCCGACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGG                                      >  2:706027/1‑211                                                                                                                                                                                                                                    TGACGATGCCGACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGGGC                                    >  1:41849/1‑209                                                                                                                                                                                                                                             CGACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGGGCAAGGTTTCGCGTATCAACGATGCCGCCGGCCGC   >  2:683258/1‑233                                                                                                                                                                                                                                              GACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGGGCAAGGTTTCGCGTATCAACGATGCCGCCGGCCGCT  <  2:682846/233‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCCTTCGAAGCTGGTGCTGCTCGGCACACTGCTCTTGCAGAATTCGATGTAGCGGCCGGCGGCATCGTTGATACGCGAAACCTTGCCCAGCTTGCCCGACTCGACAACGGTCATCGGTTGGTCGAGCAGCTCTTCGATCATCAGCTCGACCTCGTCCGGCAGCTTGGTGCCCTGGCCCGAGAAGAACTTGATGCCGTTGTCATCGTGCGGGTTGTGCGAGGCACTGATGACGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5363247‑5363484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgccgACACCGGCCATCGCTTACCTCACGCGTACCTTCCACGCCGAAGCCGGCATCGTCATCAGTGCCTCGCACAACCCGCACGATGACAACGGCATCAAGTTCTTCTCGGGCCAGGGCACCAAGCTGCCGGACGAGGTCGAGCTGATGATCGAAGAGCTGCTCGACCAACCGATGACCGTTGTCGAGTCGGGCAAGCTGGGCAAGGTTTCGCGTATCAACGATGCCGCCGGCCGCT  <  AE015451/5363528‑5363297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.