New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 538486264 (1.030)6 (0.100) 6/320 NT 9.3% coding (1326/1671 nt) lldP L‑lactate permease
?AE015451 = 5384850 58 (1.010)coding (1314/1671 nt) lldP L‑lactate permease

CCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5384626‑5384862
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtaccggcCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGCCGAAAGGAAGATCGCGGTGCCGGTGGCGGAGATC  <  AE015451/5384850‑5384649
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCG                                                                                                                                                                                                              <  1:367209/235‑1
                                CACCTGCCCCGCGATCTTCCTGTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACA                                                                                                                                                                                  <  1:274467/231‑1
                                                                            TGCTGAAGATCAAGTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAG                                                                                                                                                                                                   >  1:697909/1‑170
                                                                                                                                         CTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCCCCAACTACTCGGGCATGTCCGCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATG                                                                                                                                                                                            <  2:41175/116‑1
                                                                                                                                                                  GTGTTGGCCTTCGCATTCGACACCAACTCCGCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTAACGAAGGCGAAGGCCAACACCATGCCGAT                                                                                                                                    <  2:697908/147‑1
                                                                                                                                                                                CTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTT                                                                                             >  1:416815/1‑172
                                                                                                                                                                                      CACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGCCAGCACCAGGGCCATGGGCGAGGACATGCCCGAGTAGTTGGTGACG‑AGGCGAAGGCCAACACCATGCCGAGCGACAGAATCGGCAAGAGCAGGTCCCAGAAGGg                                                                                                   >  1:119788/1‑158
                                                                                                                                                                                                                              CTGGCCGGTACCGGCCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGCCGAAAGGAAGATCGCGGTGCCGGTGGCGGAGATC  >  1:559686/1‑217
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
CCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCGCGATCTTCCTTTCGGCGCTGATCTCGATGGCGGTGCTGAAGATCAACTTCAAAACTGGTCTTACCACTTTCAAAGAAACCTTCTGGGAACTGCGCTGGCCGATTCTGTCGATCGGCATGGTGTTGGCCTTCGCCTTCGTCACCAACTACTCGGGCATGTCCTCGACCATGGCCCTGGTGCTGGCCGGTACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5384626‑5384862
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtaccggcCAGCACCAGGGCCATGGTCGAGGACATGCCCGAGTAGTTGGTGACGAAGGCGAAGGCCAACACCATGCCGATCGACAGAATCGGCCAGCGCAGTTCCCAGAAGGTTTCTTTGAAAGTGGTAAGACCAGTTTTGAAGTTGATCTTCAGCACCGCCATCGAGATCAGCGCCGAAAGGAAGATCGCGGTGCCGGTGGCGGAGATC  <  AE015451/5384850‑5384649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.