New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5540355 =	81 (1.310)	5 (0.080)	5/328	NT	6.4%	coding (631/2355 nt)	ygiQ	putative enzyme of unknown function
	?	AE015451	5540477 =	69 (1.170)					coding (509/2355 nt)	ygiQ	putative enzyme of unknown function

CTACACCCCTGGTGGCCTGGCCGGCAGCCGTCCGGACCGTGCCAGCCTGGTGTATAGCCAGCGCTGCAAGGAGGCCTACAAGCATGTGCCGATCGTGCTCGGCGGCATCGAGGCTTCGCTGCGCCGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGCAACGCCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5540572‑5540355 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgagcACGATCGGCACATGCTTGTAGGCCTCCTTGCAGCGCTGGCTATACACCAGGCTGGCACGGTCCGGACGGCTGCCGGCCAGGCCACCAGGGGTGTAGGCATCGTCGGAACGGATCTTCTTGTCCGCGGTGTAGCGGTTGATCATCGAGTCCATGTTGCCGGCGGCCACACCGAAGAACA  >  AE015451/5540477‑5540654                                                                                                                                                                                                                                                                                                                                                                                                              CTACACCCCTGGTGGCCTGGCCGGCAGCCGTCCGGACCGTGCCAGCCTGGTGTATAGCCAGCGCTGCAAGGAGGCCTACAAGCATGTGCCGATCGTGCTCGGCGGCATCGAGGCTTCGCTGCGCCGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGCAACGCCGAGCACGATCGGC                                                                                                                                                                           <  2:946635/227‑1                                                            AGCGCTGCAAGGAGGCCTACAAGCATGTGCCGATCGTGCTCGGCGGCATCGAGGCTTCGCTGCGCCGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGCAACGC                                                                                                                                                                                         >  2:351356/1‑154                                                                              ACAAGCATGTGCCGATCGTGCTCGGCGGCATCGAGGCTTCGCTGCGCCGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGCAACGCCGA                                                                                                                                                                                      >  2:861983/1‑139                                                                                                                             CGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGCCATCCTGCTGTTCGGCAACGCCGAGCACGATCGGCACATGCTTGTAGGCCTCCTTGCAGCGCTGGCTATA                                                                                                                                        <  1:519259/138‑1                                                                                                                                ATCGCCCACTACGCCTACTTGCAGGACCAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGGAACGCCGAGCACGATCG                                                                                                                                                                             <  2:914483/98‑1                                                                                                                                                                          ATCCTGATCGATGCCAGCGCCGACGTCCTGCTGTTCGGCAACGCCGAGCACGATCGGCACATGCTTGTAGGCCTCCTTGCAGC                                                                                                                                                  <  2:267106/83‑1                                                                                                                                                                                     TGCCAGCGCCGACATCCTGCTGTTCGGCAACGCCGAGCACGATCGGCACATGCTT                                                                                                                                                                   <  2:28278/55‑1                                                                                                                                                                                                                    GCCGAGCACGATCGGCACATGCTTGTAGGCCTCCTTGCAGCGCTGGCTATACACCAGGCTGGCACGGTCCGGACGGCTGCCGGCCAGGCCACCAGGGGTGTAGGCATCGTCGGAACGGATCTTCTTGTCCGCGGTGTAGCGGTTGATCATCGAGTCCATGTTGCCGGCGGCCACACCGAAGAACA  <  2:631829/185‑1                                                                                                                                                                                                                                                                                                                                                                                                              CTACACCCCTGGTGGCCTGGCCGGCAGCCGTCCGGACCGTGCCAGCCTGGTGTATAGCCAGCGCTGCAAGGAGGCCTACAAGCATGTGCCGATCGTGCTCGGCGGCATCGAGGCTTCGCTGCGCCGCATCGCCCACTACGACTACTGGCAGGACAAGGTTCGTCACTCGATCCTGATCGATGCCAGCGCCGACATCCTGCTGTTCGGCAACGCCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5540572‑5540355 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgagcACGATCGGCACATGCTTGTAGGCCTCCTTGCAGCGCTGGCTATACACCAGGCTGGCACGGTCCGGACGGCTGCCGGCCAGGCCACCAGGGGTGTAGGCATCGTCGGAACGGATCTTCTTGTCCGCGGTGTAGCGGTTGATCATCGAGTCCATGTTGCCGGCGGCCACACCGAAGAACA  >  AE015451/5540477‑5540654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.