New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5744108 = | 92 (1.490) | 3 (0.050) | 3/332 | NT | 3.3% | coding (1757/2451 nt) | glgP | glycogen phosphorylase |
? | AE015451 | 5744125 = | 88 (1.470) | coding (1740/2451 nt) | glgP | glycogen phosphorylase | |||||
Rejected: Frequency below/above cutoff threshold. |
GGTGCCGTTCGCCGACAAACCCGGGTTCCGCAAACAGTTCGCTGCCCAGCGGCTGCACAGCAAGCGCGCCCTGGCCAGCATCATTCAGGATCGCATCGGCGTCACGGTCAACCCCGAGGCGCTATTCGACGTTCAGGTTAAACGTATTCACGAATACAAGCGCCAGTTGCTCAACCTGATGCACACCGTTGCACTGTACCAGGCCATACGCAACGAACCTGGCACCAACTGGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5744344‑5744108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGAT > AE015451/5744125‑5744250 GGTGCCGTTCGCCGACAAACCCGGGTTCCGCAAACAGTTCGCTGCCCAGCGGCTGCACAGCAAGCGCGCCCTGGCCAGCATCATTCAGGATCGCATCGGCGTCACGGTCAACCCCGAGGCGCTATTCGACGTTCAGGTTAAACGTATTCACGAATACAAGCGCCAGTTGCTCAACCTGATGCACACCGTTGCACTGTACCAGGCCATACGCAACGAACCTGGCACCAACTGGGTGC > 1:191860/1‑236 AGGATCGCATCGGCGTCACGGTCAACCCCGAGGCGCTATTCGACGTTCAGGTTAAACGTATTCACGAATACAAGCGCCAGTTGCTCAACCTGATGCACACCGTTGCACTGTACCAGGCCATACGCAACGAACCTGGCACCAACTGGGTGCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACC > 1:694806/1‑236 GCTATTCGACGTTCAGGTTAAACGTATTCACGAATACAAGCGCCAGTTGCTCAACCTGATGCACACCGTTGCACTGTACCAGGCCATACGCAACGAACCTGGCACCAACTGGGTGCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACC < 2:694805/202‑1 CCGTTGCACGGTACCAGGCCATACGCAACGAACCTGGCCCCAACTGGGTGCCAGGTTCGTTGCGTGTGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAA < 1:300649/148‑1 GGTGCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGGGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGAT < 2:941140/132‑1 GGTGCCGTTCGCCGACAAACCCGGGTTCCGCAAACAGTTCGCTGCCCAGCGGCTGCACAGCAAGCGCGCCCTGGCCAGCATCATTCAGGATCGCATCGGCGTCACGGTCAACCCCGAGGCGCTATTCGACGTTCAGGTTAAACGTATTCACGAATACAAGCGCCAGTTGCTCAACCTGATGCACACCGTTGCACTGTACCAGGCCATACGCAACGAACCTGGCACCAACTGGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5744344‑5744108 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGAT > AE015451/5744125‑5744250 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |