New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5817718	53 (0.860)	4 (0.070)	4/324	NT	7.2%	coding (236/1011 nt)	pilT	twitching motility protein
	?	AE015451	= 5817756	53 (0.910)					coding (198/1011 nt)	pilT	twitching motility protein

GTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5817480‑5817718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccggcaGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGACGGTGAGTGAGCTGGACC  <  AE015451/5817756‑5817611                                                                                                                                                                                                                                                                                                                                                                                                   GTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCC                                                                                                                                                        <  1:1067577/235‑1                                                     gcCTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCC                                                                                                                                                        <  2:522179/181‑1                                                                                                            CAACAACTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGC                                                                                                           <  2:1034915/173‑1                                                                                                                          ACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGT                                                                                                              >  1:508592/1‑156                                                                                                                          ACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGT                                                                                                              <  2:508591/156‑1                                                                                                                                                   CCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGACGTGCCATTCAACTGGCGATACAGGGTCAGCCGCATGCGCCCATACGCC                                                                                                                                                        >  2:906912/1‑89                                                                                                                                                                          cGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAA                                                                                                                                                             <  2:198354/60‑1                                                                                                                                                                              GAAAGGTAACCGCCGGGCCATTCAACTGGCGACACAGGTTCAGCCGCACGCGCCCAAGCGCC                                                                                                                                                        >  1:546706/1‑62                                                                                                                                                                                                               ACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGGCGGTGAGTGAGCTGGACC  >  2:714647/1‑179                                                                                                                                                                                                                                       GCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCGTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGACGG                 <  1:577642/140‑1                                                                                                                                                                                                                                                                                                                                                                                                   GTGCAGCGCCCGCTCGCGGTTCAGCTGGTCGAGCAGCGTTGCCAGGGTGCTGGACTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5817480‑5817718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccggcaGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGCTTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGACGGTGAGTGAGCTGGACC  <  AE015451/5817756‑5817611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.