New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5817718	53 (0.860)	4 (0.070)	4/324	NT	7.2%	coding (236/1011 nt)	pilT	twitching motility protein
	?	AE015451	= 5817756	53 (0.910)					coding (198/1011 nt)	pilT	twitching motility protein

CTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGA  >  AE015451/5817534‑5817982                                                                                                                                                                                                                               |                                                                                                                                                                                                                                   cTTGCCACTGCCGGTCGGCCCGCCCGCGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCTCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAATGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGa                                                                                                                                                                                                                        <  1:640778/235‑1 (MQ=255)       aCTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTAt                                                                                                                                                                                                                 >  1:996489/1‑236 (MQ=255)                 ggCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTGACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGc                                                                                                                                                                                                        >  1:702227/1‑235 (MQ=255)                                     gCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGCAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGAGCGTTATCCAGCACGCTGGCCATGCCCTCgct                                                                                                                                                                                        >  1:208272/1‑229 (MQ=255)                                            cGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTg                                                                                                                                                                                                                         >  1:1124798/1‑191 (MQ=255)                                             ggCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCCCCCt                                                                                                                                                                             >  1:1126628/1‑234 (MQ=255)                                             ggCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCAACGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCGTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGAt                                                                                                                                                                                        >  1:638261/1‑223 (MQ=255)                                                       aaCAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGAt                                                                                                                                                                                        >  1:233588/1‑213 (MQ=255)                                                               gAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCt                                                                                                                                                                                                       >  2:883095/1‑190 (MQ=255)                                                                    acaTCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                                                                                                                                                                <  1:380324/176‑1 (MQ=255)                                                                         cGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCATTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACACTGGCTCAACGGCGGCAAGCCCATACGCTGcc                                                                                                                                               >  1:143708/1‑235 (MQ=255)                                                                              ggTCCAGCTCACTCACCGCCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgt                                                                                                                                                                                                   >  2:714647‑M2/1‑146 (MQ=255)                                                                                   aGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                                                                                                                                                      >  2:430627/1‑187 (MQ=255)                                                                                   aGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCa                                                                                                                                                                                      <  1:430628/187‑1 (MQ=255)                                                                                      tcccgcacCGTCGCAATGCCCCCCGCGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTc                                                                                                                                                                                           <  1:963213/174‑1 (MQ=255)                                                                                            acCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGgcgccg                                                                                                                            >  1:969952/1‑234 (MQ=255)                                                                                             ccGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCACGGTCCATTTCATCGCCTTGGGCCCACtgccggcgc                                                                                                                                                                                                                           <  1:577642‑M2/140‑10 (MQ=255)                                                                                             ccGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATc                                                                                                                                                                                                                >  2:559567/1‑151 (MQ=255)                                                                                             ccGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGct                                                                                                                                                                                 >  1:61177/1‑181 (MQ=255)                                                                                             ccGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGcc                                                                                                                                                                         >  2:1116056/1‑189 (MQ=255)                                                                                             ccGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCCGCGCTGCTCGTTATCCAGCACGCTGGCCATGCCCTCGag                                                                                                                                                                                        >  1:1014720/1‑174 (MQ=255)                                                                                              cgccGCAAGGCGCCCCGGGACCAGCCGAAGGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTg                                                                                                                                                                                                      <  2:345896/157‑1 (MQ=255)                                                                                                  gCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATCTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcgg                                                                                                                                                                   >  2:795943/1‑191 (MQ=255)                                                                                                     aTGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                                                                                                                                                 >  2:1079312/1‑190 (MQ=255)                                                                                                              gggATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCCCGATCAAGGCACCCTgg                                                                                                                                                                           >  1:218001/1‑171 (MQ=255)                                                                                                               ggATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCGGGCGCAGCATCGGAATCTGGCCCGTc                                                                                                         <  1:480527/236‑1 (MQ=255)                                                                                                                   cAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                                                                                                         <  1:499247/232‑1 (MQ=255)                                                                                                                          aaGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAgg                                                                                                                                                                                   <  1:336726/151‑1 (MQ=255)                                                                                                                                 ccgccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTgg                                                                                                                                                                                                     <  2:233587/126‑1 (MQ=255)                                                                                                                                  cgccgGGCCATTCAACTGGCGAACCAGGTTCAGCCGAAAGCGCCGAGGCGCCGGCAACACCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAAcggcg                                                                                                                                                                 <  1:480355/161‑1 (MQ=255)                                                                                                                                   gccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTg                                                                                                                                                 >  2:139710/1‑176 (MQ=255)                                                                                                                                   gccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTgg                                                                                                               <  1:494583/210‑1 (MQ=255)                                                                                                                                   gccgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTgg                                                                                                               >  2:494582/1‑210 (MQ=255)                                                                                                                                     cgGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCTTACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGccc                                                                                   <  1:316079/236‑1 (MQ=255)                                                                                                                                       ggCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                                                                                                         >  1:1023854/1‑212 (MQ=255)                                                                                                                                       ggCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTc                                                                                                         <  2:1023853/212‑1 (MQ=255)                                                                                                                                         ccATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGcc                                                                                                                                                                                              >  2:729524/1‑125 (MQ=255)                                                                                                                                                             gTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACa                                                           <  1:139710/236‑1 (MQ=255)                                                                                                                                                                   ccGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAggtcg                                                      <  1:985388/235‑1 (MQ=255)                                                                                                                                                                    cGAAAGCGCCCAAGCGCCGGCACCTCCAGCGCAAGGTCCATTTCATCGCCTTGCGCCAACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAggtcgg                                                     <  1:333130/235‑1 (MQ=255)                                                                                                                                                                    cGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAggtcggt                                                    <  1:230962/236‑1 (MQ=255)                                                                                                                                                                         aacgatcaGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACAt                                               >  1:865732/8‑236 (MQ=255)                                                                                                                                                                          cgcCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAg                                                                                                    >  2:206762/1‑182 (MQ=255)                                                                                                                                                                               aaGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCCCCAGGTGCAGGTCTGAAGCCCCCGCATCCACCGCTCggcc                                                                >  2:77811/1‑211 (MQ=255)                                                                                                                                                                                   gcCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGCTCAAGGCACCCTGGCTCAACGGCGGCCAGCCCATACGCCGCAACTct                                                                                                                                          >  2:313345/1‑134 (MQ=255)                                                                                                                                                                                       gCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtgagtgagctggaccttgcggatgtgtttcaagttgttg                                                                                                <  2:1034915‑M2/173‑133 (MQ=255)                                                                                                                                                                                         aaCTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACCCGCCATCCAGGCGCAGCATCGGa                                                                                                                     >  2:142542/1‑150 (MQ=255)                                                                                                                                                                                          aCTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtgagtgagctggaccttgcggatgt                                                                                                              <  2:508591‑M2/156‑119 (MQ=255)                                                                                                                                                                                          aCTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACtgccggcgcttgggcgctttcggctgaacctgtttcgccagttgaatggcccggcggttacctttcggctgatcccggggcgcattgcgacggtgagtgagctggaccttgcggatgt                                                                                                              >  1:508592‑M2/1‑38 (MQ=255)                                                                                                                                                                                                       gTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAggtcggt                                                    <  2:742666/201‑1 (MQ=255)                                                                                                                                                                                                         ccATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGc                   >  2:1113665/1‑232 (MQ=255)                                                                                                                                                                                                         ccATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGt               >  1:321263/1‑236 (MQ=255)                                                                                                                                                                                                              tCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTgg                                                                                                                                                                                                     >  2:640844/1‑49 (MQ=255)                                                                                                                                                                                                              tCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTgg                                                                                                                                                                                                     <  1:640845/49‑1 (MQ=255)                                                                                                                                                                                                                   gCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGc                                                                                                              <  2:1169/131‑1 (MQ=255)                                                                                                                                                                                                                   gCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTa              <  2:996488/227‑1 (MQ=255)                                                                                                                                                                                                                     cTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAgc            >  1:844329/1‑226 (MQ=255)                                                                                                                                                                                                                     cTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCa    >  1:1022342/1‑235 (MQ=255)                                                                                                                                                                                                                      ttGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGa  <  1:224027/236‑1 (MQ=255)                                                                                                                                                                                                                       tGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCt                                                                                                                                                                                            <  2:740354/49‑1 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                                                                   CTTGCCACTGCCGGTCGGCCCGCCCACGAGGATCAAGCCATCCCGGCAATGCGCAACAGCTTGAAACACATCCGCAAGGTCCAGCTCACTCACCGTCGCAATGCGCCCCGGGATCAGCCGAAAGGTAACCGCCGGGCCATTCAACTGGCGAAACAGGTTCAGCCGAAAGCGCCCAAGCGCCGGCAACTCCAGCGCAAGGTCCATTTCATCGCCTTGGGCCCACTGCCGGCGCTGATCGTTATCCAGCACGCTGGCCATGCCCTCGATCAAGGCACCCTGGCTCAACGGCGGCAAGCCCATACGCTGCAACTCGCCATCCAGGCGCAGCATCGGAATCTGGCCCGTCGCCAGGTGCAGGTCTGAAGCCCCCGCATCCACAGCTCGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGA  >  AE015451/5817534‑5817982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.