New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2085466	50 (0.810)	4 (0.070)	3/324	NT	8.1%	intergenic (+175/‑420)	PP_1864/PP_1865	conserved protein of unknown function/transposase
	?	AE015451	2087373 =	44 (0.760)					intergenic (+186/+732)	PP_1865/aroH	transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

GGCGGATATCCAGCAAGAGGCCGAGCGGCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAA  >  AE015451/2085234‑2085698                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         ggCGGATATCCAGCAAGAGGCCGAGCGGCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCCGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAgc                                                                                                                                                                                                                                       <  1:205391/236‑1 (MQ=255)    ggATATCCAGCAAGAGGCCGAGCGGCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt                                                                                                                                                                                                                                    <  1:877797/236‑1 (MQ=255)    ggATATCCAGCAAGAGGCCGAGCGGCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCt                                                                                                                                                                                                                                    >  1:998461/1‑236 (MQ=255)                           ggCATTTCTGGGATGCTCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCa                                                                                                                                                                                                              <  2:360440/235‑1 (MQ=255)                           ggCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGcccc                                                                                                                                                                                                                             <  2:1080317/220‑1 (MQ=255)                            gCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgc                                                                                                                                                                                                            <  1:494534/236‑1 (MQ=255)                                             cACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgcgc                                                                                                                                                                                                          >  2:1045858/1‑221 (MQ=255)                                              aCTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCa                                                                                                                                                                                          >  1:797562/1‑236 (MQ=255)                                               cTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCTTGCAGCGCGGTCCTCCCGGGAGc                                                                                                                                                                                           >  1:1086205/1‑234 (MQ=255)                                                  aGGAAGTGATGCAAGGCGTGGCAGTAGCGTCTGCTCCCGCTTCTGTTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTg                                                                                                                                                                                                                <  2:782116/210‑1 (MQ=255)                                                     aaGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGGGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACCGGCATGGATGCCCGTCAAGCGCTgg                                                                                                                                                                                                                                  <  1:289549/189‑1 (MQ=255)                                                     aaGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGtcct                                                                                                                                                                                                    >  1:827661/1‑219 (MQ=255)                                                             ccAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAgg                                                                                                                                                                            <  1:884838/235‑1 (MQ=255)                                                             ccAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAgg                                                                                                                                                                            <  1:1047693/235‑1 (MQ=255)                                                                 gCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATg                                                                                                                                                                                                                       >  1:456532/1‑188 (MQ=255)                                                                 gCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGAcc                                                                                                                                                                       <  1:791339/236‑1 (MQ=255)                                                                   gTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgcgc                                                                                                                                                                                                          <  2:443595/199‑1 (MQ=255)                                                                     ggCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGAccc                                                                                                                                                                      >  2:1073616/1‑233 (MQ=255)                                                                       cAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGTGGAGGCATTGCGGAGGGAGATGACGGGCATGGATGCCCGTCAAGCGCTg                                                                                                                                                                                                                                   <  2:1033351/170‑1 (MQ=255)                                                                              ttCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGAGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCggg                                                                                                                                                                                              <  2:255954/200‑1 (MQ=255)                                                                                    tCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAgggg                                                                                                                                                    >  1:136069/1‑236 (MQ=255)                                                                                           tctgcttctgcttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAgg                                                                                                                                                      <  1:573815/227‑1 (MQ=255)                                                                                            ctgcttctgcttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAgcgc                                                                                                                                                                                                          <  1:974810/174‑1 (MQ=255)                                                                                                ttctgcttctgcttctgcttctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGcgcg                                                                                                                                                                                                         >  2:336984/1‑171 (MQ=255)                                                                                                                   tctgctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg                                                                                                                                                                                               <  2:593716/162‑1 (MQ=33)                                                                                                                    ctgctCTTGCTTTGGCTTTTGCTGCGAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgtagc                                                                                                                                                           <  1:247760/197‑1 (MQ=17)                                                                                                                              tttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAgg                                                                                                                                                      <  2:417487/192‑1 (MQ=31)                                                                                                                               ttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAtctccctccgcaatgcctccactcggc                                                                                                                                                                                                               >  2:935035‑M1/1‑107 (MQ=255)                                                                                                                                      ttGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCgg                                                                                                                                                                                               <  2:1027809/143‑1 (MQ=32)                                                                                                                                       tGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACttt                                                                                                                  <  2:412867/219‑1 (MQ=35)                                                                                                                                         cTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGATCCGACGGCTTTGGTTACTTTGGCCACGAc                                                                                                         >  1:515444/1‑226 (MQ=21)                                                                                                                                          ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCg                                                                                                                                   >  2:819707/1‑199 (MQ=33)                                                                                                                                            cTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTAACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAgg                                                                                                                                                                            <  2:412418/156‑1 (MQ=17)                                                                                                                                                 cgcgcgGTAGTTCAGGCGATGCAGATTGCGCCTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatc                                                                                                                                                                                              <  1:761522‑M1/133‑45 (MQ=255)                                                                                                                                                      ggTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGAGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAGAGTAACCCGCCGGAAGGGCg                                                                                  >  1:1042559/1‑236 (MQ=18)                                                                                                                                                            tCAGGCGATGCAGATTGCGACTGCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcgagaagcgaattcggtgatcggcc                                                                                                                          <  1:3527‑M1/190‑113 (MQ=255)                                                                                                                                                             cAGGCGGTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTa                                                                                                                      <  2:1028291/193‑1 (MQ=25)                                                                                                                                                              aGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCgg                                                                                         >  1:561063/1‑221 (MQ=34)                                                                                                                                                                   aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGAt                                                                                                                                              >  2:33207/1‑163 (MQ=31)                                                                                                                                                                    tGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAg                                                                                                                                                                                                                           <  1:82603/85‑1 (MQ=31)                                                                                                                                                                    tGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAg                                                                                                                                                                                                                           >  2:82603/1‑85 (MQ=31)                                                                                                                                                                                   cAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtga                                                      >  2:909159/1‑235 (MQ=34)                                                                                                                                                                                             aGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCg                                                                                  >  2:660307/1‑197 (MQ=33)                                                                                                                                                                                               cgcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACt                                         <  2:577470/236‑1 (MQ=34)                                                                                                                                                                                                gcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACtt                                        >  1:464593/1‑236 (MQ=33)                                                                                                                                                                                                gcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGGTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGAGGAAAGGTg                                                                          >  1:774485/1‑202 (MQ=17)                                                                                                                                                                                                 ccgggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTggtcg                                                                                                             <  2:117809/164‑4 (MQ=18)                                                                                                                                                                                                       ttGCGGAGGGAGGTGACGGGCATCCATGCCCGTCAtctccctccgcaatgcctccacgcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcaagagcaag                                                                                                                                         <  2:69488‑M1/132‑98 (MQ=255)                                                                                                                                                                                                            gagggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCt                                                               <  1:724618/201‑1 (MQ=32)                                                                                                                                                                                                             aggaaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGaaa                               <  2:749267/232‑1 (MQ=37)                                                                                                                                                                                                              agcgcttGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAc                                                                                                >  1:642795/7‑166 (MQ=18)                                                                                                                                                                                                                cgcttGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGAGGAGGGGAGCCGACGGGTTTGGTTACTTTGGCCACGACCAAAGTaa                                                                                                 >  2:111678/5‑163 (MQ=9)                                                                                                                                                                                                                                aTGCGCGTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgctta                                                                                                                                                                   <  2:968329‑M1/81‑72 (MQ=255)                                                                                                                                                                                                                                aTGCCCGTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcgagaagcgaattcggtgatcggccggccacgccgatgcattccgggagggtctgcccc                                                                                        >  1:17642‑M1/1‑10 (MQ=255)                                                                                                                                                                                                                                aTGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa                                                     >  2:814763/1‑191 (MQ=35)                                                                                                                                                                                                                                aTGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa                                                     <  1:814764/191‑1 (MQ=35)                                                                                                                                                                                                                                 tGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAcc                                                                                               <  2:561062/148‑1 (MQ=34)                                                                                                                                                                                                                                     cGTCAAGCGCGGGGCCCGAGGATGGGGCCTGCGGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa                                                                         <  1:867584/166‑1 (MQ=16)                                                                                                                                                                                                                                      gTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcgagaagcgaattcggtgatcggccggcaccgccgatgcattcggcgaggttctgcccggtcatctggataaggatatcgccggcatggctgccctcggcct                                             >  2:1110625‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                      gTCAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcgagaagcgaattcggtgatcggccggcaccgccgatgcattcggcgaggttctgcccggtcatctggataaggatatcgccggcatggctgccctcggcct                                             <  1:1110626‑M1/193‑190 (MQ=255)                                                                                                                                                                                                                                      gTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGACTACTTGATGTGAAAGCGCACAACCCAAAGGCCcaaaagctcaa  >  2:573300/1‑236 (MQ=39)                                                                                                                                                                                                                                        cAtctccctccgcaatgcctccactcggcctcctgaagtcgcaatctgcgtcgcctggactaccgcgcgcttagaagcaagatcaaaagcgagaagcgaattcggtgatcggccggcaccgccgatgcattcggcgaggttctgcccggtcatctggataaggatatcgccggcatggctg                                                       <  2:639697‑M1/181‑180 (MQ=255)                                                                                                                                                                                                                                        cAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGgcgc                                                                 <  1:29185/171‑1 (MQ=33)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         GGCGGATATCCAGCAAGAGGCCGAGCGGCATTTCTGGGATGATCCACTGAGGAAGTGATGCCAGGCGTGGCAGTAGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAAGCGCACAACCCAAAGGCCCAAAAGCTCAA  >  AE015451/2085234‑2085698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.