New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2085466	50 (0.810)	4 (0.070)	3/324	NT	8.1%	intergenic (+175/‑420)	PP_1864/PP_1865	conserved protein of unknown function/transposase
	?	AE015451	2087373 =	44 (0.760)					intergenic (+186/+732)	PP_1865/aroH	transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

GGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTC  >  AE015451/2087148‑2087594                                                                                                                                                                                                                                   |                                                                                                                                                                                                                              ggATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCCTGGGGCCTCCGCGCTTGACGGGCATCCATGCCCGTCATctccctcc                                                                                                                                                                                                                       >  1:639698/1‑234 (MQ=255)           atcaAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATctccctcc                                                                                                                                                                                                                       <  1:49556/224‑1 (MQ=255)           atcaAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTcc                                                                                                                                                                                                            <  1:329189/235‑1 (MQ=255)            tcaAAGCCGCCAAACCCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCAc                                                                                                                                                                                                          <  1:326829/236‑1 (MQ=255)                                     ttGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCt                                                                                                                                                                                   <  1:504930/234‑1 (MQ=255)                                          aGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCaa                                                                                                                                                                                                                   <  1:806188/197‑1 (MQ=255)                                                             ggTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTa                                                                                                                                                         <  1:559672/236‑1 (MQ=255)                                                                           gTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGcctcct                                                                                                                                                                                                >  2:447427/1‑183 (MQ=255)                                                                                 aaaaGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCgag                                                                                                                                     <  1:389665/236‑1 (MQ=255)                                                                                     gcaaCCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGaa                                                                                                                                   <  1:892529/232‑1 (MQ=255)                                                                                            aaaaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCTGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCACCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGaa                                                                                                                                                                                             >  2:504719/1‑169 (MQ=255)                                                                                              aaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATctccctc                                                                                                                                                                                                                        >  1:182887/1‑140 (MQ=255)                                                                                              aaCCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATctccctc                                                                                                                                                                                                                        <  2:182887/140‑1 (MQ=255)                                                                                                ccGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATc                                                                                                                                                                                    <  1:260419/174‑1 (MQ=255)                                                                                                    cGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCa                                                                                                                                                                                                                    >  2:337803/1‑138 (MQ=255)                                                                                                           catcatCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCaaaagccaa                                                                                                                                           <  1:966285/204‑8 (MQ=255)                                                                                                             tcatcCGGCCCCTACGCTGCGTTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGa                                                                                                                               <  1:934720/214‑1 (MQ=255)                                                                                                               atcCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTTGCCTGAACTAcc                                                                                                                                                                  <  1:1108157/177‑1 (MQ=255)                                                                                                                   ggCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGGCCGTCATCCCCCTCCCCACTGCCTCCACTCGGCCCCCTg                                                                                                                                                                                               >  2:131437/1‑144 (MQ=17)                                                                                                                    gCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCCTGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCa                                                                                                                                                                                       >  1:17155/1‑151 (MQ=255)                                                                                                                        ttggcttttgcttctaagcgcgcggtagttcaggcgatgcagattgcgacttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatggatgcccgtcaTCTCCCTCCGCAATGCCTCCACTCGGc                                                                                                                                                                                                     >  2:935035‑M2/108‑134 (MQ=255)                                                                                                                                 gcTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCCTGACGGGCATCCATGCCCGTCATCACCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGCCGAAATCTGCATccccc                                                                                                                                                                          >  2:683726/1‑150 (MQ=17)                                                                                                                                  cTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATc                                                                                                                                              <  1:984125/178‑1 (MQ=255)                                                                                                                                    ccGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTTGCCTGAACTACcgcgcac                                                                                                                                                            >  2:1134807/1‑160 (MQ=255)                                                                                                                                     cGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGt                                                                                                                                                                               <  2:922902/142‑1 (MQ=255)                                                                                                                                          tCCCCTCGCTCCGGTCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGt                                                                            <  1:22363/236‑1 (MQ=255)                                                                                                                                          cgcgcggtagttcaggcgatgcagattgcgccttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatggatgcccgtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATc                                                                                                                                                                                    <  1:761522‑M2/44‑1 (MQ=255)                                                                                                                                           ccccTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCgg                                                                             <  2:413188/234‑1 (MQ=255)                                                                                                                                            cccTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTc                                                                           <  1:644968/235‑1 (MQ=255)                                                                                                                                             ccTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTg                                                                                                                       >  1:352059/1‑190 (MQ=255)                                                                                                                                             ccTCGCTCCCGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCt                                                                                                                                                           <  1:557316/154‑1 (MQ=255)                                                                                                                                                    ccGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATc                                                                                                                    <  2:757595/186‑1 (MQ=255)                                                                                                                                                     tcaggcgatgcagattgcgactgcaggaggccgagcgcagggcttgcggagggaggtgacgggcatggatgcccgtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATcggcc                                                                                                                <  1:3527‑M2/112‑1 (MQ=255)                                                                                                                                                          ttGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACt                                                                                                                                                                                                         >  1:366568/1‑95 (MQ=255)                                                                                                                                                           tGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGAt                                                                                                    >  2:466796/1‑194 (MQ=11)                                                                                                                                                           tGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGAt                                                                                                    <  1:466797/194‑1 (MQ=11)                                                                                                                                                                  gggAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTGCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACcgc                                                                                                                                                                >  2:465805/1‑128 (MQ=255)                                                                                                                                                                  gggAGCA‑CGCGCTGCAGGCCCAATCCATGGGGCCTCAGCGCTTGACGGTCATCCATGCCCGTCATCTCCCTCCGCAATGCCTGCCCTCGGcctc                                                                                                                                                                                                  <  2:545594/94‑1 (MQ=14)                                                                                                                                                                            cgcTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCg                                                                                                                                >  1:985024/1‑151 (MQ=255)                                                                                                                                                                                gCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTc                                                                                                                                                                                          >  1:771467/1‑89 (MQ=255)                                                                                                                                                                                  agtccccATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGtactac                                                                                                                                                                   >  1:20909/4‑110 (MQ=255)                                                                                                                                                                                  aGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCCCCCTCGGCCATGCCTCCGCTCGGc                                                                                                                                                                                                     >  2:511694/1‑76 (MQ=14)                                                                                                                                                                                            catGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGGCTACCGCGCGCCTAGAAGCAAGATCACAAGCGAGAAGCGCATTcc                                                                                                                          >  1:427290/1‑140 (MQ=255)                                                                                                                                                                                                ttgcggagggaggtgacgggcatccatgcccgtcaTCTCCCTCCGCAATGCCTCCACGCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAaaagcaagagcaag                                                                                                                               <  2:69488‑M2/97‑6 (MQ=255)                                                                                                                                                                                                gggCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTgg                        <  1:978826/235‑1 (MQ=255)                                                                                                                                                                                                       aGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGc                <  1:96775/236‑1 (MQ=255)                                                                                                                                                                                                          gcTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTAcc                                                                                                                                                                  >  1:674620/1‑87 (MQ=255)                                                                                                                                                                                                                   gCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGc                                     <  2:518444/203‑1 (MQ=255)                                                                                                                                                                                                                     aTCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGc                                                                                 <  1:1066327/157‑1 (MQ=255)                                                                                                                                                                                                                     aTCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGc                                                                                 >  2:1066326/1‑157 (MQ=255)                                                                                                                                                                                                                      tCCATGCCCGTCACCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGttgctcttgctc  >  1:203179/1‑235 (MQ=255)                                                                                                                                                                                                                         atgcgcgtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTa                                                                                                                                                         <  2:968329‑M2/71‑1 (MQ=255)                                                                                                                                                                                                                         atgcccgtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCCACGCCGATGCATTCCGGGAGGGTCTgcccc                                                                              >  1:17642‑M2/11‑155 (MQ=255)                                                                                                                                                                                                                               gtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCt                                   <  1:1110626‑M2/189‑1 (MQ=255)                                                                                                                                                                                                                               gtcaTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCt                                   >  2:1110625‑M2/5‑193 (MQ=255)                                                                                                                                                                                                                                 caTCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTg                                             <  2:639697‑M2/179‑1 (MQ=255)                                                                                                                                                                                                                                   tctcCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCCGGACTACCGCGCGCGTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGAGAGCGGCCGGCACCGCCGATg                                                                                                   >  2:365961/1‑125 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                              GGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTCCGCAATGCCTCCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGGACTACCGCGCGCTTAGAAGCAAGATCAAAAGCGAGAAGCGAATTCGGTGATCGGCCGGCACCGCCGATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTC  >  AE015451/2087148‑2087594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.